Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07710

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07705 and BPHYT_RS07710 are separated by 2 nucleotidesBPHYT_RS07710 and BPHYT_RS07715 are separated by 9 nucleotides BPHYT_RS07705: BPHYT_RS07705 - arginine succinyltransferase, at 1,752,780 to 1,753,820 _RS07705 BPHYT_RS07710: BPHYT_RS07710 - succinylglutamate-semialdehyde dehydrogenase, at 1,753,823 to 1,755,286 _RS07710 BPHYT_RS07715: BPHYT_RS07715 - N-succinylarginine dihydrolase, at 1,755,296 to 1,756,636 _RS07715 Position (kb) 1753 1754 1755 1756Strain fitness (log2 ratio) -2 -1 0 1at 1753.045 kb on - strand, within BPHYT_RS07705at 1753.330 kb on - strand, within BPHYT_RS07705at 1753.356 kb on + strand, within BPHYT_RS07705at 1753.416 kb on + strand, within BPHYT_RS07705at 1755.998 kb on + strand, within BPHYT_RS07715

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,753,045 - BPHYT_RS07705 0.25 -1.1
1,753,330 - BPHYT_RS07705 0.53 -1.8
1,753,356 + BPHYT_RS07705 0.55 +0.9
1,753,416 + BPHYT_RS07705 0.61 -1.4
1,755,998 + BPHYT_RS07715 0.52 -0.1

Or see this region's nucleotide sequence