Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05290

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05285 and BPHYT_RS05290 are separated by 792 nucleotidesBPHYT_RS05290 and BPHYT_RS05295 overlap by 26 nucleotidesBPHYT_RS05295 and BPHYT_RS05300 are separated by 83 nucleotidesBPHYT_RS05300 and BPHYT_RS05305 are separated by 74 nucleotides BPHYT_RS05285: BPHYT_RS05285 - hypothetical protein, at 1,219,301 to 1,219,594 _RS05285 BPHYT_RS05290: BPHYT_RS05290 - hypothetical protein, at 1,220,387 to 1,220,890 _RS05290 BPHYT_RS05295: BPHYT_RS05295 - hypothetical protein, at 1,220,865 to 1,221,233 _RS05295 BPHYT_RS05300: BPHYT_RS05300 - polyketide cyclase, at 1,221,317 to 1,221,721 _RS05300 BPHYT_RS05305: BPHYT_RS05305 - LysR family transcriptional regulator, at 1,221,796 to 1,222,737 _RS05305 Position (kb) 1220 1221Strain fitness (log2 ratio) -1 0 1 2 3at 1219.613 kb on - strandat 1220.056 kb on - strandat 1220.331 kb on + strandat 1220.386 kb on + strandat 1220.818 kb on + strand, within BPHYT_RS05290at 1220.819 kb on - strand, within BPHYT_RS05290at 1221.035 kb on + strand, within BPHYT_RS05295at 1221.359 kb on - strand, within BPHYT_RS05300at 1221.359 kb on - strand, within BPHYT_RS05300at 1221.387 kb on - strand, within BPHYT_RS05300at 1221.472 kb on - strand, within BPHYT_RS05300at 1221.670 kb on - strand, within BPHYT_RS05300at 1221.691 kb on - strandat 1221.693 kb on - strandat 1221.766 kb on + strandat 1221.845 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,219,613 - -0.1
1,220,056 - +0.5
1,220,331 + -1.0
1,220,386 + +0.8
1,220,818 + BPHYT_RS05290 0.86 +2.8
1,220,819 - BPHYT_RS05290 0.86 -1.4
1,221,035 + BPHYT_RS05295 0.46 +0.8
1,221,359 - BPHYT_RS05300 0.10 +0.9
1,221,359 - BPHYT_RS05300 0.10 -0.1
1,221,387 - BPHYT_RS05300 0.17 -0.2
1,221,472 - BPHYT_RS05300 0.38 -0.9
1,221,670 - BPHYT_RS05300 0.87 +1.0
1,221,691 - +0.4
1,221,693 - +0.3
1,221,766 + -0.5
1,221,845 - -0.2

Or see this region's nucleotide sequence