Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03650 and BPHYT_RS03655 are separated by 206 nucleotides BPHYT_RS03655 and BPHYT_RS03660 are separated by 131 nucleotides
BPHYT_RS03650: BPHYT_RS03650 - DNA mismatch repair protein, at 829,035 to 831,098
_RS03650
BPHYT_RS03655: BPHYT_RS03655 - membrane protein, at 831,305 to 831,976
_RS03655
BPHYT_RS03660: BPHYT_RS03660 - mechanosensitive ion channel protein MscS, at 832,108 to 832,920
_RS03660
Position (kb) 831
832 Strain fitness (log2 ratio) -2
-1
0
1
2 at 830.748 kb on - strand, within BPHYT_RS03650 at 831.019 kb on - strand at 831.109 kb on + strand at 831.110 kb on - strand at 831.152 kb on + strand at 831.192 kb on + strand at 831.193 kb on - strand at 831.293 kb on - strand at 831.318 kb on + strand at 831.567 kb on - strand, within BPHYT_RS03655 at 831.833 kb on + strand, within BPHYT_RS03655 at 831.983 kb on - strand at 832.211 kb on + strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.416 kb on - strand, within BPHYT_RS03660 at 832.426 kb on - strand, within BPHYT_RS03660 at 832.745 kb on + strand, within BPHYT_RS03660 at 832.974 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 830,748 - BPHYT_RS03650 0.83 +0.3 831,019 - -1.6 831,109 + -0.2 831,110 - +0.5 831,152 + -1.7 831,192 + -0.6 831,193 - -0.2 831,293 - -1.2 831,318 + -1.0 831,567 - BPHYT_RS03655 0.39 -2.7 831,833 + BPHYT_RS03655 0.79 -1.7 831,983 - +2.0 832,211 + BPHYT_RS03660 0.13 +0.0 832,416 - BPHYT_RS03660 0.38 +0.3 832,416 - BPHYT_RS03660 0.38 -0.0 832,416 - BPHYT_RS03660 0.38 -0.8 832,416 - BPHYT_RS03660 0.38 +1.7 832,426 - BPHYT_RS03660 0.39 +0.4 832,745 + BPHYT_RS03660 0.78 +0.8 832,974 + -0.0
Or see this region's nucleotide sequence