Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03135

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03125 and BPHYT_RS03130 are separated by 74 nucleotidesBPHYT_RS03130 and BPHYT_RS03135 are separated by 74 nucleotidesBPHYT_RS03135 and BPHYT_RS03140 overlap by 4 nucleotidesBPHYT_RS03140 and BPHYT_RS03145 are separated by 23 nucleotides BPHYT_RS03125: BPHYT_RS03125 - D-aminoacylase, at 699,193 to 700,674 _RS03125 BPHYT_RS03130: BPHYT_RS03130 - hypothetical protein, at 700,749 to 701,135 _RS03130 BPHYT_RS03135: BPHYT_RS03135 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 701,210 to 702,034 _RS03135 BPHYT_RS03140: BPHYT_RS03140 - 5'-nucleotidase, at 702,031 to 702,933 _RS03140 BPHYT_RS03145: BPHYT_RS03145 - threonine dehydratase, at 702,957 to 704,480 _RS03145 Position (kb) 701 702 703Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 700.225 kb on + strand, within BPHYT_RS03125at 700.360 kb on + strand, within BPHYT_RS03125at 700.360 kb on + strand, within BPHYT_RS03125at 700.360 kb on + strand, within BPHYT_RS03125at 700.360 kb on + strand, within BPHYT_RS03125at 700.433 kb on - strand, within BPHYT_RS03125at 700.433 kb on - strand, within BPHYT_RS03125at 700.461 kb on + strand, within BPHYT_RS03125at 700.735 kb on + strandat 700.736 kb on - strandat 700.759 kb on - strandat 700.759 kb on - strandat 700.796 kb on + strand, within BPHYT_RS03130at 701.031 kb on + strand, within BPHYT_RS03130at 701.115 kb on + strandat 701.116 kb on - strandat 701.117 kb on + strandat 701.117 kb on + strandat 701.118 kb on - strandat 701.212 kb on - strandat 701.212 kb on - strandat 701.253 kb on + strandat 701.254 kb on - strandat 701.297 kb on - strand, within BPHYT_RS03135at 701.298 kb on + strand, within BPHYT_RS03135at 701.307 kb on + strand, within BPHYT_RS03135at 701.307 kb on + strand, within BPHYT_RS03135at 701.364 kb on - strand, within BPHYT_RS03135at 701.580 kb on + strand, within BPHYT_RS03135at 701.581 kb on - strand, within BPHYT_RS03135at 701.581 kb on - strand, within BPHYT_RS03135at 701.581 kb on - strand, within BPHYT_RS03135at 701.581 kb on - strand, within BPHYT_RS03135at 701.772 kb on + strand, within BPHYT_RS03135at 701.880 kb on + strand, within BPHYT_RS03135at 701.880 kb on + strand, within BPHYT_RS03135at 701.881 kb on - strand, within BPHYT_RS03135at 701.881 kb on - strand, within BPHYT_RS03135at 701.982 kb on + strandat 701.983 kb on - strandat 702.265 kb on - strand, within BPHYT_RS03140at 702.270 kb on + strand, within BPHYT_RS03140at 702.270 kb on + strand, within BPHYT_RS03140at 702.270 kb on + strand, within BPHYT_RS03140at 702.271 kb on - strand, within BPHYT_RS03140at 702.271 kb on - strand, within BPHYT_RS03140at 702.271 kb on - strand, within BPHYT_RS03140at 702.631 kb on + strand, within BPHYT_RS03140at 702.632 kb on - strand, within BPHYT_RS03140at 702.828 kb on - strand, within BPHYT_RS03140at 702.851 kb on + strandat 702.954 kb on + strandat 702.954 kb on + strandat 702.955 kb on - strandat 702.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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700,225 + BPHYT_RS03125 0.70 +0.4
700,360 + BPHYT_RS03125 0.79 +0.3
700,360 + BPHYT_RS03125 0.79 -0.1
700,360 + BPHYT_RS03125 0.79 +0.6
700,360 + BPHYT_RS03125 0.79 -1.2
700,433 - BPHYT_RS03125 0.84 +1.0
700,433 - BPHYT_RS03125 0.84 +1.2
700,461 + BPHYT_RS03125 0.86 -0.2
700,735 + +0.2
700,736 - -0.6
700,759 - +0.7
700,759 - +0.7
700,796 + BPHYT_RS03130 0.12 -0.6
701,031 + BPHYT_RS03130 0.73 -0.0
701,115 + +0.6
701,116 - -1.0
701,117 + +0.4
701,117 + +0.2
701,118 - -0.7
701,212 - +0.9
701,212 - +0.7
701,253 + -2.9
701,254 - -3.5
701,297 - BPHYT_RS03135 0.11 +0.2
701,298 + BPHYT_RS03135 0.11 -3.4
701,307 + BPHYT_RS03135 0.12 -3.5
701,307 + BPHYT_RS03135 0.12 -1.6
701,364 - BPHYT_RS03135 0.19 -3.0
701,580 + BPHYT_RS03135 0.45 -2.4
701,581 - BPHYT_RS03135 0.45 -2.9
701,581 - BPHYT_RS03135 0.45 +0.4
701,581 - BPHYT_RS03135 0.45 -6.4
701,581 - BPHYT_RS03135 0.45 -3.4
701,772 + BPHYT_RS03135 0.68 -3.1
701,880 + BPHYT_RS03135 0.81 -2.7
701,880 + BPHYT_RS03135 0.81 -3.8
701,881 - BPHYT_RS03135 0.81 +1.0
701,881 - BPHYT_RS03135 0.81 -2.0
701,982 + -3.8
701,983 - -2.4
702,265 - BPHYT_RS03140 0.26 +0.2
702,270 + BPHYT_RS03140 0.26 -0.7
702,270 + BPHYT_RS03140 0.26 -1.8
702,270 + BPHYT_RS03140 0.26 -0.3
702,271 - BPHYT_RS03140 0.27 +0.3
702,271 - BPHYT_RS03140 0.27 +0.7
702,271 - BPHYT_RS03140 0.27 +0.5
702,631 + BPHYT_RS03140 0.66 -0.8
702,632 - BPHYT_RS03140 0.67 +0.0
702,828 - BPHYT_RS03140 0.88 -0.2
702,851 + -1.3
702,954 + +1.3
702,954 + +0.6
702,955 - +2.0
702,955 - +0.3

Or see this region's nucleotide sequence