Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02965

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS02960 and BPHYT_RS02965 are separated by 184 nucleotidesBPHYT_RS02965 and BPHYT_RS02970 are separated by 37 nucleotides BPHYT_RS02960: BPHYT_RS02960 - peptidase, at 657,164 to 658,390 _RS02960 BPHYT_RS02965: BPHYT_RS02965 - membrane protein, at 658,575 to 659,660 _RS02965 BPHYT_RS02970: BPHYT_RS02970 - excinuclease ABC subunit A, at 659,698 to 662,571 _RS02970 Position (kb) 658 659 660Strain fitness (log2 ratio) -2 -1 0 1 2 3at 657.799 kb on + strand, within BPHYT_RS02960at 657.799 kb on + strand, within BPHYT_RS02960at 657.799 kb on + strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.800 kb on - strand, within BPHYT_RS02960at 657.801 kb on + strand, within BPHYT_RS02960at 657.978 kb on + strand, within BPHYT_RS02960at 658.142 kb on - strand, within BPHYT_RS02960at 658.142 kb on - strand, within BPHYT_RS02960at 658.170 kb on + strand, within BPHYT_RS02960at 658.171 kb on - strand, within BPHYT_RS02960at 658.171 kb on - strand, within BPHYT_RS02960at 658.610 kb on + strandat 658.613 kb on - strandat 659.066 kb on + strand, within BPHYT_RS02965at 659.066 kb on + strand, within BPHYT_RS02965at 659.067 kb on - strand, within BPHYT_RS02965at 659.540 kb on + strand, within BPHYT_RS02965at 659.543 kb on - strand, within BPHYT_RS02965at 659.614 kb on - strandat 659.666 kb on - strandat 659.666 kb on - strandat 659.696 kb on - strandat 659.700 kb on - strandat 659.892 kb on + strandat 659.895 kb on + strandat 659.895 kb on + strandat 659.896 kb on - strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.977 kb on + strandat 659.978 kb on - strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.981 kb on + strandat 659.982 kb on - strandat 659.982 kb on - strandat 659.982 kb on - strandat 659.983 kb on + strandat 659.983 kb on + strandat 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.022 kb on + strand, within BPHYT_RS02970at 660.084 kb on - strand, within BPHYT_RS02970at 660.152 kb on + strand, within BPHYT_RS02970at 660.152 kb on + strand, within BPHYT_RS02970at 660.203 kb on + strand, within BPHYT_RS02970at 660.204 kb on - strand, within BPHYT_RS02970at 660.230 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strand, within BPHYT_RS02970at 660.263 kb on + strandat 660.264 kb on - strand, within BPHYT_RS02970at 660.337 kb on + strand, within BPHYT_RS02970at 660.338 kb on - strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.431 kb on + strand, within BPHYT_RS02970at 660.432 kb on - strand, within BPHYT_RS02970at 660.575 kb on + strand, within BPHYT_RS02970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
remove
657,799 + BPHYT_RS02960 0.52 +2.0
657,799 + BPHYT_RS02960 0.52 +0.9
657,799 + BPHYT_RS02960 0.52 -1.7
657,800 - BPHYT_RS02960 0.52 +0.1
657,800 - BPHYT_RS02960 0.52 +0.3
657,800 - BPHYT_RS02960 0.52 +0.2
657,800 - BPHYT_RS02960 0.52 +0.6
657,801 + BPHYT_RS02960 0.52 -0.5
657,978 + BPHYT_RS02960 0.66 +0.0
658,142 - BPHYT_RS02960 0.80 +0.1
658,142 - BPHYT_RS02960 0.80 -0.5
658,170 + BPHYT_RS02960 0.82 -0.2
658,171 - BPHYT_RS02960 0.82 +0.2
658,171 - BPHYT_RS02960 0.82 +0.2
658,610 + -0.4
658,613 - -1.0
659,066 + BPHYT_RS02965 0.45 -1.0
659,066 + BPHYT_RS02965 0.45 -1.0
659,067 - BPHYT_RS02965 0.45 +1.0
659,540 + BPHYT_RS02965 0.89 -2.2
659,543 - BPHYT_RS02965 0.89 -1.0
659,614 - -1.2
659,666 - -0.0
659,666 - +0.5
659,696 - -0.6
659,700 - +1.1
659,892 + -0.3
659,895 + -1.0
659,895 + -1.0
659,896 - +3.0
659,977 + -1.9
659,977 + +0.0
659,977 + -0.7
659,977 + -1.6
659,977 + -0.5
659,977 + -0.4
659,977 + -1.9
659,978 - -1.0
659,981 + +0.1
659,981 + -0.5
659,981 + -1.2
659,981 + -0.7
659,981 + -0.7
659,981 + -0.8
659,981 + -0.4
659,982 - +2.3
659,982 - +0.4
659,982 - +1.6
659,983 + -0.6
659,983 + -2.4
660,022 + BPHYT_RS02970 0.11 -0.5
660,022 + BPHYT_RS02970 0.11 -2.0
660,022 + BPHYT_RS02970 0.11 +0.9
660,022 + BPHYT_RS02970 0.11 +0.2
660,084 - BPHYT_RS02970 0.13 -0.3
660,152 + BPHYT_RS02970 0.16 +0.8
660,152 + BPHYT_RS02970 0.16 -0.4
660,203 + BPHYT_RS02970 0.18 -0.2
660,204 - BPHYT_RS02970 0.18 -1.0
660,230 + BPHYT_RS02970 0.19 +0.2
660,263 + BPHYT_RS02970 0.20 +0.2
660,263 + BPHYT_RS02970 0.20 -0.6
660,263 + -1.0
660,264 - BPHYT_RS02970 0.20 -0.1
660,337 + BPHYT_RS02970 0.22 -0.3
660,338 - BPHYT_RS02970 0.22 -0.2
660,431 + BPHYT_RS02970 0.26 -0.8
660,431 + BPHYT_RS02970 0.26 +0.7
660,431 + BPHYT_RS02970 0.26 +0.3
660,431 + BPHYT_RS02970 0.26 -1.6
660,432 - BPHYT_RS02970 0.26 +0.4
660,575 + BPHYT_RS02970 0.31 -0.9

Or see this region's nucleotide sequence