Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02685

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02675 and BPHYT_RS02680 are separated by 67 nucleotidesBPHYT_RS02680 and BPHYT_RS02685 are separated by 22 nucleotidesBPHYT_RS02685 and BPHYT_RS02690 are separated by 6 nucleotidesBPHYT_RS02690 and BPHYT_RS02695 are separated by 4 nucleotides BPHYT_RS02675: BPHYT_RS02675 - hypothetical protein, at 601,659 to 602,375 _RS02675 BPHYT_RS02680: BPHYT_RS02680 - cytochrome C oxidase subunit I, at 602,443 to 603,105 _RS02680 BPHYT_RS02685: BPHYT_RS02685 - cytochrome C oxidase subunit I, at 603,128 to 604,237 _RS02685 BPHYT_RS02690: BPHYT_RS02690 - protoheme IX farnesyltransferase, at 604,244 to 605,149 _RS02690 BPHYT_RS02695: BPHYT_RS02695 - photosynthetic protein synthase I, at 605,154 to 605,771 _RS02695 Position (kb) 603 604 605Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 602.277 kb on + strand, within BPHYT_RS02675at 602.278 kb on - strand, within BPHYT_RS02675at 602.278 kb on - strand, within BPHYT_RS02675at 602.373 kb on + strandat 602.373 kb on + strandat 602.373 kb on + strandat 602.374 kb on - strandat 602.374 kb on - strandat 602.441 kb on + strandat 602.441 kb on + strandat 602.520 kb on + strand, within BPHYT_RS02680at 602.520 kb on + strand, within BPHYT_RS02680at 602.596 kb on + strand, within BPHYT_RS02680at 602.597 kb on - strand, within BPHYT_RS02680at 602.608 kb on + strand, within BPHYT_RS02680at 602.608 kb on + strand, within BPHYT_RS02680at 602.608 kb on + strand, within BPHYT_RS02680at 602.609 kb on - strand, within BPHYT_RS02680at 602.609 kb on - strand, within BPHYT_RS02680at 602.798 kb on - strand, within BPHYT_RS02680at 602.995 kb on + strand, within BPHYT_RS02680at 602.995 kb on + strand, within BPHYT_RS02680at 602.995 kb on + strand, within BPHYT_RS02680at 602.995 kb on + strand, within BPHYT_RS02680at 602.995 kb on + strand, within BPHYT_RS02680at 602.995 kb on + strand, within BPHYT_RS02680at 602.996 kb on - strand, within BPHYT_RS02680at 602.996 kb on - strand, within BPHYT_RS02680at 602.996 kb on - strand, within BPHYT_RS02680at 602.996 kb on - strand, within BPHYT_RS02680at 603.114 kb on + strandat 603.115 kb on - strandat 603.116 kb on + strandat 603.116 kb on + strandat 603.116 kb on + strandat 603.116 kb on + strandat 603.116 kb on + strandat 603.117 kb on - strandat 603.117 kb on - strandat 603.117 kb on - strandat 603.117 kb on - strandat 603.117 kb on - strandat 603.117 kb on - strandat 603.120 kb on + strandat 603.120 kb on + strandat 603.121 kb on - strandat 603.121 kb on - strandat 603.121 kb on - strandat 603.135 kb on + strandat 603.163 kb on + strandat 603.185 kb on + strandat 603.186 kb on - strandat 603.186 kb on - strandat 603.186 kb on - strandat 603.438 kb on - strand, within BPHYT_RS02685at 603.499 kb on + strand, within BPHYT_RS02685at 603.499 kb on + strand, within BPHYT_RS02685at 603.499 kb on + strand, within BPHYT_RS02685at 603.522 kb on + strand, within BPHYT_RS02685at 603.522 kb on + strand, within BPHYT_RS02685at 603.523 kb on - strand, within BPHYT_RS02685at 603.523 kb on - strand, within BPHYT_RS02685at 603.614 kb on - strand, within BPHYT_RS02685at 603.648 kb on + strand, within BPHYT_RS02685at 603.794 kb on + strand, within BPHYT_RS02685at 603.980 kb on + strand, within BPHYT_RS02685at 604.126 kb on + strand, within BPHYT_RS02685at 604.163 kb on - strandat 604.184 kb on + strandat 604.186 kb on + strandat 604.186 kb on + strandat 604.187 kb on - strandat 604.293 kb on - strandat 604.293 kb on - strandat 604.293 kb on - strandat 604.580 kb on + strand, within BPHYT_RS02690at 604.580 kb on + strand, within BPHYT_RS02690at 604.581 kb on - strand, within BPHYT_RS02690at 604.622 kb on - strand, within BPHYT_RS02690at 604.646 kb on + strand, within BPHYT_RS02690at 604.646 kb on + strand, within BPHYT_RS02690at 604.646 kb on + strand, within BPHYT_RS02690at 604.647 kb on - strand, within BPHYT_RS02690at 604.647 kb on - strand, within BPHYT_RS02690at 604.648 kb on + strand, within BPHYT_RS02690at 604.839 kb on - strand, within BPHYT_RS02690at 604.886 kb on + strand, within BPHYT_RS02690at 604.886 kb on + strand, within BPHYT_RS02690at 604.886 kb on + strand, within BPHYT_RS02690at 604.900 kb on + strand, within BPHYT_RS02690at 604.910 kb on + strand, within BPHYT_RS02690at 604.910 kb on + strand, within BPHYT_RS02690at 604.911 kb on - strand, within BPHYT_RS02690at 604.973 kb on + strand, within BPHYT_RS02690at 604.973 kb on + strand, within BPHYT_RS02690at 604.974 kb on - strand, within BPHYT_RS02690at 605.150 kb on + strandat 605.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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602,277 + BPHYT_RS02675 0.86 -1.3
602,278 - BPHYT_RS02675 0.86 -2.0
602,278 - BPHYT_RS02675 0.86 -1.6
602,373 + +0.5
602,373 + -1.1
602,373 + -0.0
602,374 - -1.0
602,374 - -0.8
602,441 + -2.1
602,441 + -1.9
602,520 + BPHYT_RS02680 0.12 -0.6
602,520 + BPHYT_RS02680 0.12 -0.9
602,596 + BPHYT_RS02680 0.23 -0.2
602,597 - BPHYT_RS02680 0.23 -1.6
602,608 + BPHYT_RS02680 0.25 -1.0
602,608 + BPHYT_RS02680 0.25 -1.1
602,608 + BPHYT_RS02680 0.25 -2.3
602,609 - BPHYT_RS02680 0.25 -2.3
602,609 - BPHYT_RS02680 0.25 -0.8
602,798 - BPHYT_RS02680 0.54 -2.1
602,995 + BPHYT_RS02680 0.83 +1.4
602,995 + BPHYT_RS02680 0.83 -2.4
602,995 + BPHYT_RS02680 0.83 -1.2
602,995 + BPHYT_RS02680 0.83 -0.0
602,995 + BPHYT_RS02680 0.83 -1.8
602,995 + BPHYT_RS02680 0.83 -1.5
602,996 - BPHYT_RS02680 0.83 -1.8
602,996 - BPHYT_RS02680 0.83 -3.4
602,996 - BPHYT_RS02680 0.83 -2.5
602,996 - BPHYT_RS02680 0.83 -2.7
603,114 + -0.3
603,115 - -2.6
603,116 + -1.0
603,116 + +0.2
603,116 + +0.3
603,116 + +0.1
603,116 + +0.0
603,117 - -1.2
603,117 - -2.3
603,117 - -2.0
603,117 - -2.0
603,117 - -2.4
603,117 - -2.0
603,120 + +0.6
603,120 + -0.6
603,121 - -3.1
603,121 - -0.6
603,121 - -2.9
603,135 + -2.6
603,163 + -1.2
603,185 + -1.8
603,186 - -1.3
603,186 - -2.5
603,186 - -3.7
603,438 - BPHYT_RS02685 0.28 -1.8
603,499 + BPHYT_RS02685 0.33 -4.1
603,499 + BPHYT_RS02685 0.33 -2.4
603,499 + BPHYT_RS02685 0.33 -3.0
603,522 + BPHYT_RS02685 0.35 -4.1
603,522 + BPHYT_RS02685 0.35 -4.2
603,523 - BPHYT_RS02685 0.36 -2.8
603,523 - BPHYT_RS02685 0.36 -2.9
603,614 - BPHYT_RS02685 0.44 -1.9
603,648 + BPHYT_RS02685 0.47 -4.0
603,794 + BPHYT_RS02685 0.60 -1.3
603,980 + BPHYT_RS02685 0.77 -2.6
604,126 + BPHYT_RS02685 0.90 -2.6
604,163 - -0.9
604,184 + -0.3
604,186 + -1.3
604,186 + -0.7
604,187 - -3.1
604,293 - -6.7
604,293 - -5.1
604,293 - +0.0
604,580 + BPHYT_RS02690 0.37 -2.6
604,580 + BPHYT_RS02690 0.37 -2.1
604,581 - BPHYT_RS02690 0.37 +0.0
604,622 - BPHYT_RS02690 0.42 -1.8
604,646 + BPHYT_RS02690 0.44 -3.6
604,646 + BPHYT_RS02690 0.44 -4.3
604,646 + BPHYT_RS02690 0.44 -3.4
604,647 - BPHYT_RS02690 0.44 -3.6
604,647 - BPHYT_RS02690 0.44 -6.0
604,648 + BPHYT_RS02690 0.45 -3.3
604,839 - BPHYT_RS02690 0.66 -4.8
604,886 + BPHYT_RS02690 0.71 -2.1
604,886 + BPHYT_RS02690 0.71 -2.6
604,886 + BPHYT_RS02690 0.71 -4.5
604,900 + BPHYT_RS02690 0.72 -3.0
604,910 + BPHYT_RS02690 0.74 -2.6
604,910 + BPHYT_RS02690 0.74 -2.3
604,911 - BPHYT_RS02690 0.74 -3.0
604,973 + BPHYT_RS02690 0.80 -2.1
604,973 + BPHYT_RS02690 0.80 -5.2
604,974 - BPHYT_RS02690 0.81 -1.0
605,150 + +0.6
605,151 - +1.6

Or see this region's nucleotide sequence