Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02665 and BPHYT_RS02670 are separated by 181 nucleotides BPHYT_RS02670 and BPHYT_RS02675 are separated by 111 nucleotides BPHYT_RS02675 and BPHYT_RS02680 are separated by 67 nucleotides BPHYT_RS02680 and BPHYT_RS02685 are separated by 22 nucleotides
BPHYT_RS02665: BPHYT_RS02665 - MFS transporter, at 600,299 to 601,156
_RS02665
BPHYT_RS02670: BPHYT_RS02670 - membrane protein, at 601,338 to 601,547
_RS02670
BPHYT_RS02675: BPHYT_RS02675 - hypothetical protein, at 601,659 to 602,375
_RS02675
BPHYT_RS02680: BPHYT_RS02680 - cytochrome C oxidase subunit I, at 602,443 to 603,105
_RS02680
BPHYT_RS02685: BPHYT_RS02685 - cytochrome C oxidase subunit I, at 603,128 to 604,237
_RS02685
Position (kb) 601
602
603 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 600.918 kb on - strand, within BPHYT_RS02665 at 600.918 kb on - strand, within BPHYT_RS02665 at 600.953 kb on + strand, within BPHYT_RS02665 at 600.954 kb on - strand, within BPHYT_RS02665 at 600.954 kb on - strand, within BPHYT_RS02665 at 600.954 kb on - strand at 601.039 kb on + strand, within BPHYT_RS02665 at 601.057 kb on + strand at 601.058 kb on - strand at 601.134 kb on - strand at 601.134 kb on - strand at 601.134 kb on - strand at 601.259 kb on + strand at 601.259 kb on + strand at 601.268 kb on - strand at 601.349 kb on - strand at 601.356 kb on - strand at 601.588 kb on - strand at 601.890 kb on + strand, within BPHYT_RS02675 at 601.890 kb on + strand, within BPHYT_RS02675 at 601.908 kb on + strand, within BPHYT_RS02675 at 601.908 kb on + strand, within BPHYT_RS02675 at 601.909 kb on - strand, within BPHYT_RS02675 at 601.929 kb on + strand, within BPHYT_RS02675 at 601.930 kb on - strand, within BPHYT_RS02675 at 601.965 kb on + strand, within BPHYT_RS02675 at 601.966 kb on - strand, within BPHYT_RS02675 at 601.966 kb on - strand, within BPHYT_RS02675 at 602.001 kb on - strand, within BPHYT_RS02675 at 602.001 kb on - strand, within BPHYT_RS02675 at 602.029 kb on - strand, within BPHYT_RS02675 at 602.092 kb on - strand, within BPHYT_RS02675 at 602.277 kb on + strand, within BPHYT_RS02675 at 602.278 kb on - strand, within BPHYT_RS02675 at 602.278 kb on - strand, within BPHYT_RS02675 at 602.373 kb on + strand at 602.373 kb on + strand at 602.373 kb on + strand at 602.374 kb on - strand at 602.374 kb on - strand at 602.441 kb on + strand at 602.441 kb on + strand at 602.520 kb on + strand, within BPHYT_RS02680 at 602.520 kb on + strand, within BPHYT_RS02680 at 602.596 kb on + strand, within BPHYT_RS02680 at 602.597 kb on - strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.608 kb on + strand, within BPHYT_RS02680 at 602.609 kb on - strand, within BPHYT_RS02680 at 602.609 kb on - strand, within BPHYT_RS02680 at 602.798 kb on - strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.995 kb on + strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 602.996 kb on - strand, within BPHYT_RS02680 at 603.114 kb on + strand at 603.115 kb on - strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.116 kb on + strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.117 kb on - strand at 603.120 kb on + strand at 603.120 kb on + strand at 603.121 kb on - strand at 603.121 kb on - strand at 603.121 kb on - strand at 603.135 kb on + strand at 603.163 kb on + strand at 603.185 kb on + strand at 603.186 kb on - strand at 603.186 kb on - strand at 603.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 600,918 - BPHYT_RS02665 0.72 -1.8 600,918 - BPHYT_RS02665 0.72 -3.3 600,953 + BPHYT_RS02665 0.76 -2.8 600,954 - BPHYT_RS02665 0.76 -3.8 600,954 - BPHYT_RS02665 0.76 -2.7 600,954 - +0.4 601,039 + BPHYT_RS02665 0.86 -2.2 601,057 + -1.0 601,058 - -1.6 601,134 - -3.1 601,134 - -3.6 601,134 - -2.4 601,259 + -0.4 601,259 + -0.3 601,268 - +0.4 601,349 - -0.7 601,356 - -1.8 601,588 - -1.3 601,890 + BPHYT_RS02675 0.32 -0.5 601,890 + BPHYT_RS02675 0.32 -2.0 601,908 + BPHYT_RS02675 0.35 -2.0 601,908 + BPHYT_RS02675 0.35 -2.1 601,909 - BPHYT_RS02675 0.35 -1.9 601,929 + BPHYT_RS02675 0.38 -1.3 601,930 - BPHYT_RS02675 0.38 +0.1 601,965 + BPHYT_RS02675 0.43 -2.3 601,966 - BPHYT_RS02675 0.43 -0.7 601,966 - BPHYT_RS02675 0.43 +1.4 602,001 - BPHYT_RS02675 0.48 -3.3 602,001 - BPHYT_RS02675 0.48 -1.4 602,029 - BPHYT_RS02675 0.52 +0.4 602,092 - BPHYT_RS02675 0.60 -1.0 602,277 + BPHYT_RS02675 0.86 -1.3 602,278 - BPHYT_RS02675 0.86 -2.0 602,278 - BPHYT_RS02675 0.86 -1.6 602,373 + +0.5 602,373 + -1.1 602,373 + -0.0 602,374 - -1.0 602,374 - -0.8 602,441 + -2.1 602,441 + -1.9 602,520 + BPHYT_RS02680 0.12 -0.6 602,520 + BPHYT_RS02680 0.12 -0.9 602,596 + BPHYT_RS02680 0.23 -0.2 602,597 - BPHYT_RS02680 0.23 -1.6 602,608 + BPHYT_RS02680 0.25 -1.0 602,608 + BPHYT_RS02680 0.25 -1.1 602,608 + BPHYT_RS02680 0.25 -2.3 602,609 - BPHYT_RS02680 0.25 -2.3 602,609 - BPHYT_RS02680 0.25 -0.8 602,798 - BPHYT_RS02680 0.54 -2.1 602,995 + BPHYT_RS02680 0.83 +1.4 602,995 + BPHYT_RS02680 0.83 -2.4 602,995 + BPHYT_RS02680 0.83 -1.2 602,995 + BPHYT_RS02680 0.83 -0.0 602,995 + BPHYT_RS02680 0.83 -1.8 602,995 + BPHYT_RS02680 0.83 -1.5 602,996 - BPHYT_RS02680 0.83 -1.8 602,996 - BPHYT_RS02680 0.83 -3.4 602,996 - BPHYT_RS02680 0.83 -2.5 602,996 - BPHYT_RS02680 0.83 -2.7 603,114 + -0.3 603,115 - -2.6 603,116 + -1.0 603,116 + +0.2 603,116 + +0.3 603,116 + +0.1 603,116 + +0.0 603,117 - -1.2 603,117 - -2.3 603,117 - -2.0 603,117 - -2.0 603,117 - -2.4 603,117 - -2.0 603,120 + +0.6 603,120 + -0.6 603,121 - -3.1 603,121 - -0.6 603,121 - -2.9 603,135 + -2.6 603,163 + -1.2 603,185 + -1.8 603,186 - -1.3 603,186 - -2.5 603,186 - -3.7
Or see this region's nucleotide sequence