Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS34875 and BPHYT_RS34880 are separated by 251 nucleotides BPHYT_RS34880 and BPHYT_RS34885 are separated by 333 nucleotides BPHYT_RS34885 and BPHYT_RS34890 are separated by 56 nucleotides BPHYT_RS34890 and BPHYT_RS34895 overlap by 8 nucleotides
BPHYT_RS34875: BPHYT_RS34875 - hypothetical protein, at 3,427,978 to 3,428,313
_RS34875
BPHYT_RS34880: BPHYT_RS34880 - hypothetical protein, at 3,428,565 to 3,428,936
_RS34880
BPHYT_RS34885: BPHYT_RS34885 - hypothetical protein, at 3,429,270 to 3,431,009
_RS34885
BPHYT_RS34890: BPHYT_RS34890 - hypothetical protein, at 3,431,066 to 3,431,326
_RS34890
BPHYT_RS34895: BPHYT_RS34895 - endonuclease, at 3,431,319 to 3,432,068
_RS34895
Position (kb) 3429
3430
3431
3432 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3428.522 kb on - strand at 3428.526 kb on - strand at 3428.799 kb on + strand, within BPHYT_RS34880 at 3429.156 kb on - strand at 3429.165 kb on + strand at 3429.251 kb on - strand at 3429.330 kb on + strand at 3429.447 kb on - strand, within BPHYT_RS34885 at 3429.450 kb on + strand, within BPHYT_RS34885 at 3429.567 kb on + strand, within BPHYT_RS34885 at 3430.010 kb on - strand, within BPHYT_RS34885 at 3430.215 kb on - strand, within BPHYT_RS34885 at 3430.226 kb on + strand, within BPHYT_RS34885 at 3430.416 kb on + strand, within BPHYT_RS34885 at 3430.425 kb on + strand, within BPHYT_RS34885 at 3430.426 kb on - strand, within BPHYT_RS34885 at 3431.578 kb on + strand, within BPHYT_RS34895 at 3431.579 kb on - strand, within BPHYT_RS34895 at 3431.582 kb on + strand, within BPHYT_RS34895 at 3431.761 kb on + strand, within BPHYT_RS34895 at 3431.927 kb on - strand, within BPHYT_RS34895
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 3,428,522 - -0.2 3,428,526 - -0.6 3,428,799 + BPHYT_RS34880 0.63 -0.5 3,429,156 - +1.2 3,429,165 + +1.1 3,429,251 - +0.3 3,429,330 + -0.4 3,429,447 - BPHYT_RS34885 0.10 +1.7 3,429,450 + BPHYT_RS34885 0.10 -2.9 3,429,567 + BPHYT_RS34885 0.17 -0.5 3,430,010 - BPHYT_RS34885 0.43 -0.4 3,430,215 - BPHYT_RS34885 0.54 -0.4 3,430,226 + BPHYT_RS34885 0.55 -0.5 3,430,416 + BPHYT_RS34885 0.66 -0.3 3,430,425 + BPHYT_RS34885 0.66 -1.2 3,430,426 - BPHYT_RS34885 0.66 +0.2 3,431,578 + BPHYT_RS34895 0.35 +0.2 3,431,579 - BPHYT_RS34895 0.35 +0.3 3,431,582 + BPHYT_RS34895 0.35 +1.1 3,431,761 + BPHYT_RS34895 0.59 +1.0 3,431,927 - BPHYT_RS34895 0.81 -1.6
Or see this region's nucleotide sequence