Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23580 and BPHYT_RS23585 are separated by 84 nucleotides BPHYT_RS23585 and BPHYT_RS23590 are separated by 18 nucleotides
BPHYT_RS23580: BPHYT_RS23580 - hypothetical protein, at 862,660 to 863,697
_RS23580
BPHYT_RS23585: BPHYT_RS23585 - chemotaxis protein CheY, at 863,782 to 866,340
_RS23585
BPHYT_RS23590: BPHYT_RS23590 - hypothetical protein, at 866,359 to 867,585
_RS23590
Position (kb) 863
864
865
866
867 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 862.784 kb on - strand, within BPHYT_RS23580 at 862.954 kb on - strand, within BPHYT_RS23580 at 863.072 kb on - strand, within BPHYT_RS23580 at 863.149 kb on + strand, within BPHYT_RS23580 at 863.151 kb on + strand, within BPHYT_RS23580 at 863.152 kb on - strand, within BPHYT_RS23580 at 863.198 kb on + strand, within BPHYT_RS23580 at 863.254 kb on + strand, within BPHYT_RS23580 at 863.254 kb on + strand, within BPHYT_RS23580 at 863.421 kb on + strand, within BPHYT_RS23580 at 863.446 kb on + strand, within BPHYT_RS23580 at 863.446 kb on + strand, within BPHYT_RS23580 at 863.447 kb on - strand, within BPHYT_RS23580 at 863.447 kb on - strand, within BPHYT_RS23580 at 863.825 kb on + strand at 864.184 kb on + strand, within BPHYT_RS23585 at 864.423 kb on + strand, within BPHYT_RS23585 at 864.424 kb on - strand, within BPHYT_RS23585 at 864.424 kb on - strand, within BPHYT_RS23585 at 864.531 kb on - strand, within BPHYT_RS23585 at 864.750 kb on + strand, within BPHYT_RS23585 at 864.752 kb on + strand, within BPHYT_RS23585 at 865.389 kb on + strand, within BPHYT_RS23585 at 865.494 kb on + strand, within BPHYT_RS23585 at 865.494 kb on + strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.495 kb on - strand, within BPHYT_RS23585 at 865.599 kb on - strand, within BPHYT_RS23585 at 865.601 kb on - strand, within BPHYT_RS23585 at 865.812 kb on + strand, within BPHYT_RS23585 at 866.087 kb on + strand at 866.108 kb on + strand at 866.108 kb on + strand at 866.225 kb on + strand at 866.225 kb on + strand at 866.236 kb on + strand at 866.236 kb on + strand at 866.240 kb on + strand at 866.241 kb on - strand at 866.244 kb on - strand at 866.335 kb on + strand at 866.360 kb on + strand at 866.360 kb on + strand at 866.361 kb on - strand at 866.569 kb on - strand, within BPHYT_RS23590 at 866.570 kb on + strand, within BPHYT_RS23590 at 866.571 kb on - strand, within BPHYT_RS23590 at 866.646 kb on + strand, within BPHYT_RS23590 at 866.647 kb on - strand, within BPHYT_RS23590 at 866.647 kb on - strand, within BPHYT_RS23590 at 866.648 kb on + strand, within BPHYT_RS23590 at 866.648 kb on + strand, within BPHYT_RS23590 at 866.649 kb on - strand, within BPHYT_RS23590 at 866.655 kb on + strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.656 kb on - strand, within BPHYT_RS23590 at 866.955 kb on - strand, within BPHYT_RS23590 at 866.995 kb on + strand, within BPHYT_RS23590 at 867.131 kb on + strand, within BPHYT_RS23590 at 867.132 kb on - strand, within BPHYT_RS23590 at 867.143 kb on + strand, within BPHYT_RS23590 at 867.285 kb on + strand, within BPHYT_RS23590
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 862,784 - BPHYT_RS23580 0.12 -0.5 862,954 - BPHYT_RS23580 0.28 -1.2 863,072 - BPHYT_RS23580 0.40 -0.9 863,149 + BPHYT_RS23580 0.47 -0.8 863,151 + BPHYT_RS23580 0.47 -0.0 863,152 - BPHYT_RS23580 0.47 +0.1 863,198 + BPHYT_RS23580 0.52 -0.5 863,254 + BPHYT_RS23580 0.57 +0.3 863,254 + BPHYT_RS23580 0.57 +0.7 863,421 + BPHYT_RS23580 0.73 -0.7 863,446 + BPHYT_RS23580 0.76 +0.2 863,446 + BPHYT_RS23580 0.76 -0.2 863,447 - BPHYT_RS23580 0.76 -0.3 863,447 - BPHYT_RS23580 0.76 +1.3 863,825 + +1.8 864,184 + BPHYT_RS23585 0.16 +0.2 864,423 + BPHYT_RS23585 0.25 +0.9 864,424 - BPHYT_RS23585 0.25 +0.5 864,424 - BPHYT_RS23585 0.25 +0.2 864,531 - BPHYT_RS23585 0.29 +1.0 864,750 + BPHYT_RS23585 0.38 +0.1 864,752 + BPHYT_RS23585 0.38 +1.3 865,389 + BPHYT_RS23585 0.63 +0.4 865,494 + BPHYT_RS23585 0.67 +2.1 865,494 + BPHYT_RS23585 0.67 -0.3 865,495 - BPHYT_RS23585 0.67 -0.0 865,495 - BPHYT_RS23585 0.67 +0.3 865,495 - BPHYT_RS23585 0.67 +0.8 865,495 - BPHYT_RS23585 0.67 -0.8 865,599 - BPHYT_RS23585 0.71 -2.3 865,601 - BPHYT_RS23585 0.71 +0.6 865,812 + BPHYT_RS23585 0.79 -0.3 866,087 + +0.0 866,108 + -0.3 866,108 + -0.2 866,225 + +2.0 866,225 + +0.7 866,236 + +0.9 866,236 + +0.5 866,240 + -0.1 866,241 - +0.1 866,244 - +3.2 866,335 + +0.1 866,360 + -0.0 866,360 + -1.4 866,361 - -0.9 866,569 - BPHYT_RS23590 0.17 -0.0 866,570 + BPHYT_RS23590 0.17 +0.9 866,571 - BPHYT_RS23590 0.17 -1.8 866,646 + BPHYT_RS23590 0.23 -0.3 866,647 - BPHYT_RS23590 0.23 +0.0 866,647 - BPHYT_RS23590 0.23 -1.6 866,648 + BPHYT_RS23590 0.24 +0.0 866,648 + BPHYT_RS23590 0.24 +0.9 866,649 - BPHYT_RS23590 0.24 -0.7 866,655 + BPHYT_RS23590 0.24 -0.2 866,656 - BPHYT_RS23590 0.24 -1.4 866,656 - BPHYT_RS23590 0.24 -1.2 866,656 - BPHYT_RS23590 0.24 -0.9 866,656 - BPHYT_RS23590 0.24 -0.2 866,955 - BPHYT_RS23590 0.49 -0.3 866,995 + BPHYT_RS23590 0.52 +1.0 867,131 + BPHYT_RS23590 0.63 +0.0 867,132 - BPHYT_RS23590 0.63 +0.1 867,143 + BPHYT_RS23590 0.64 +1.9 867,285 + BPHYT_RS23590 0.75 -2.1
Or see this region's nucleotide sequence