Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22720 and BPHYT_RS22725 are separated by 195 nucleotides BPHYT_RS22725 and BPHYT_RS22730 are separated by 52 nucleotides
BPHYT_RS22720: BPHYT_RS22720 - LysR family transcriptional regulator, at 652,473 to 653,456
_RS22720
BPHYT_RS22725: BPHYT_RS22725 - glycosyl transferase family 51, at 653,652 to 656,732
_RS22725
BPHYT_RS22730: BPHYT_RS22730 - serine/threonine kinase, at 656,785 to 658,011
_RS22730
Position (kb) 653
654
655
656
657 Strain fitness (log2 ratio) -2
-1
0
1 at 652.760 kb on - strand, within BPHYT_RS22720 at 652.974 kb on + strand, within BPHYT_RS22720 at 652.975 kb on - strand, within BPHYT_RS22720 at 652.981 kb on - strand, within BPHYT_RS22720 at 653.091 kb on + strand, within BPHYT_RS22720 at 653.593 kb on - strand at 653.812 kb on - strand at 654.537 kb on + strand, within BPHYT_RS22725 at 654.664 kb on - strand, within BPHYT_RS22725 at 654.682 kb on - strand, within BPHYT_RS22725 at 654.682 kb on - strand, within BPHYT_RS22725 at 654.711 kb on + strand, within BPHYT_RS22725 at 655.204 kb on - strand, within BPHYT_RS22725 at 655.851 kb on - strand, within BPHYT_RS22725 at 655.858 kb on - strand, within BPHYT_RS22725 at 655.904 kb on + strand, within BPHYT_RS22725 at 656.601 kb on + strand at 656.711 kb on + strand at 656.846 kb on + strand at 656.847 kb on - strand at 657.527 kb on - strand, within BPHYT_RS22730
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 652,760 - BPHYT_RS22720 0.29 -1.9 652,974 + BPHYT_RS22720 0.51 -0.2 652,975 - BPHYT_RS22720 0.51 +0.2 652,981 - BPHYT_RS22720 0.52 +0.2 653,091 + BPHYT_RS22720 0.63 -0.2 653,593 - -0.3 653,812 - +0.8 654,537 + BPHYT_RS22725 0.29 -0.5 654,664 - BPHYT_RS22725 0.33 +0.4 654,682 - BPHYT_RS22725 0.33 +1.5 654,682 - BPHYT_RS22725 0.33 +0.6 654,711 + BPHYT_RS22725 0.34 -1.7 655,204 - BPHYT_RS22725 0.50 +0.1 655,851 - BPHYT_RS22725 0.71 -0.4 655,858 - BPHYT_RS22725 0.72 +0.0 655,904 + BPHYT_RS22725 0.73 -2.1 656,601 + +0.3 656,711 + +0.9 656,846 + -0.1 656,847 - -0.8 657,527 - BPHYT_RS22730 0.60 +0.9
Or see this region's nucleotide sequence