Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05050 and BPHYT_RS05055 are separated by 278 nucleotides BPHYT_RS05055 and BPHYT_RS05060 are separated by 66 nucleotides BPHYT_RS05060 and BPHYT_RS05065 are separated by 13 nucleotides
BPHYT_RS05050: BPHYT_RS05050 - glutathione S-transferase, at 1,164,011 to 1,164,670
_RS05050
BPHYT_RS05055: BPHYT_RS05055 - flagellar hook protein FliD, at 1,164,949 to 1,166,457
_RS05055
BPHYT_RS05060: BPHYT_RS05060 - membrane protein, at 1,166,524 to 1,167,144
_RS05060
BPHYT_RS05065: BPHYT_RS05065 - DNA mismatch repair protein MutS, at 1,167,158 to 1,167,916
_RS05065
Position (kb) 1164
1165
1166
1167 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1164.255 kb on + strand, within BPHYT_RS05050 at 1164.330 kb on + strand, within BPHYT_RS05050 at 1164.360 kb on + strand, within BPHYT_RS05050 at 1164.360 kb on + strand, within BPHYT_RS05050 at 1164.361 kb on - strand at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.361 kb on - strand, within BPHYT_RS05050 at 1164.634 kb on - strand at 1164.654 kb on + strand at 1164.691 kb on - strand at 1164.782 kb on + strand at 1164.802 kb on - strand at 1164.817 kb on + strand at 1164.853 kb on - strand at 1164.934 kb on + strand at 1164.934 kb on + strand at 1165.303 kb on + strand, within BPHYT_RS05055 at 1165.304 kb on - strand, within BPHYT_RS05055 at 1165.304 kb on - strand, within BPHYT_RS05055 at 1165.304 kb on - strand, within BPHYT_RS05055 at 1165.599 kb on - strand, within BPHYT_RS05055 at 1165.599 kb on - strand, within BPHYT_RS05055 at 1165.897 kb on + strand, within BPHYT_RS05055 at 1165.898 kb on - strand, within BPHYT_RS05055 at 1165.898 kb on - strand, within BPHYT_RS05055 at 1165.898 kb on - strand, within BPHYT_RS05055 at 1165.936 kb on + strand, within BPHYT_RS05055 at 1166.143 kb on - strand at 1166.314 kb on + strand at 1166.398 kb on + strand at 1166.520 kb on - strand at 1166.520 kb on - strand at 1166.603 kb on + strand, within BPHYT_RS05060 at 1166.603 kb on + strand, within BPHYT_RS05060 at 1166.639 kb on + strand, within BPHYT_RS05060 at 1166.640 kb on - strand, within BPHYT_RS05060 at 1166.640 kb on - strand, within BPHYT_RS05060 at 1166.640 kb on - strand, within BPHYT_RS05060 at 1166.640 kb on - strand, within BPHYT_RS05060 at 1166.640 kb on - strand, within BPHYT_RS05060 at 1166.815 kb on + strand, within BPHYT_RS05060 at 1166.815 kb on + strand, within BPHYT_RS05060 at 1166.815 kb on + strand, within BPHYT_RS05060 at 1166.816 kb on - strand, within BPHYT_RS05060 at 1166.816 kb on - strand, within BPHYT_RS05060 at 1166.816 kb on - strand, within BPHYT_RS05060 at 1166.937 kb on - strand, within BPHYT_RS05060 at 1166.958 kb on - strand, within BPHYT_RS05060 at 1167.299 kb on + strand, within BPHYT_RS05065 at 1167.300 kb on - strand, within BPHYT_RS05065
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,164,255 + BPHYT_RS05050 0.37 +0.0 1,164,330 + BPHYT_RS05050 0.48 +0.4 1,164,360 + BPHYT_RS05050 0.53 +0.4 1,164,360 + BPHYT_RS05050 0.53 +0.9 1,164,361 - +1.0 1,164,361 - BPHYT_RS05050 0.53 -0.0 1,164,361 - BPHYT_RS05050 0.53 -0.3 1,164,361 - BPHYT_RS05050 0.53 -0.1 1,164,634 - +0.1 1,164,654 + +0.2 1,164,691 - +0.2 1,164,782 + +0.0 1,164,802 - +0.3 1,164,817 + +0.8 1,164,853 - +0.0 1,164,934 + +0.4 1,164,934 + +0.1 1,165,303 + BPHYT_RS05055 0.23 -0.3 1,165,304 - BPHYT_RS05055 0.24 +0.9 1,165,304 - BPHYT_RS05055 0.24 +1.2 1,165,304 - BPHYT_RS05055 0.24 +0.5 1,165,599 - BPHYT_RS05055 0.43 +0.0 1,165,599 - BPHYT_RS05055 0.43 +0.1 1,165,897 + BPHYT_RS05055 0.63 +0.8 1,165,898 - BPHYT_RS05055 0.63 -0.2 1,165,898 - BPHYT_RS05055 0.63 -0.3 1,165,898 - BPHYT_RS05055 0.63 +0.2 1,165,936 + BPHYT_RS05055 0.65 -0.4 1,166,143 - +1.0 1,166,314 + -1.1 1,166,398 + -1.1 1,166,520 - +1.0 1,166,520 - -4.2 1,166,603 + BPHYT_RS05060 0.13 +0.1 1,166,603 + BPHYT_RS05060 0.13 -0.9 1,166,639 + BPHYT_RS05060 0.19 +0.1 1,166,640 - BPHYT_RS05060 0.19 +0.6 1,166,640 - BPHYT_RS05060 0.19 +2.9 1,166,640 - BPHYT_RS05060 0.19 -0.3 1,166,640 - BPHYT_RS05060 0.19 +1.0 1,166,640 - BPHYT_RS05060 0.19 +1.8 1,166,815 + BPHYT_RS05060 0.47 +0.5 1,166,815 + BPHYT_RS05060 0.47 +0.1 1,166,815 + BPHYT_RS05060 0.47 +1.2 1,166,816 - BPHYT_RS05060 0.47 -0.7 1,166,816 - BPHYT_RS05060 0.47 -0.1 1,166,816 - BPHYT_RS05060 0.47 +0.4 1,166,937 - BPHYT_RS05060 0.67 -1.0 1,166,958 - BPHYT_RS05060 0.70 +1.1 1,167,299 + BPHYT_RS05065 0.19 -0.3 1,167,300 - BPHYT_RS05065 0.19 +0.4
Or see this region's nucleotide sequence