Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03790 and BPHYT_RS03795 are separated by 326 nucleotides BPHYT_RS03795 and BPHYT_RS03800 are separated by 82 nucleotides
BPHYT_RS03790: BPHYT_RS03790 - diguanylate phosphodiesterase, at 854,800 to 855,633
_RS03790
BPHYT_RS03795: BPHYT_RS03795 - 4-hydroxybenzoate transporter, at 855,960 to 857,324
_RS03795
BPHYT_RS03800: BPHYT_RS03800 - homogentisate 1,2-dioxygenase, at 857,407 to 858,705
_RS03800
Position (kb) 855
856
857
858 Strain fitness (log2 ratio) -2
-1
0
1 at 855.072 kb on - strand, within BPHYT_RS03790 at 855.080 kb on + strand, within BPHYT_RS03790 at 855.095 kb on + strand, within BPHYT_RS03790 at 855.207 kb on - strand, within BPHYT_RS03790 at 855.247 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.358 kb on + strand, within BPHYT_RS03790 at 855.359 kb on - strand, within BPHYT_RS03790 at 855.495 kb on - strand, within BPHYT_RS03790 at 855.635 kb on + strand at 855.635 kb on + strand at 855.635 kb on + strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.636 kb on - strand at 855.642 kb on - strand at 855.676 kb on + strand at 855.677 kb on - strand at 855.714 kb on + strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.715 kb on - strand at 855.848 kb on + strand at 855.848 kb on + strand at 855.849 kb on - strand at 855.849 kb on - strand at 855.871 kb on + strand at 855.871 kb on + strand at 855.872 kb on - strand at 855.872 kb on - strand at 855.872 kb on - strand at 855.872 kb on - strand at 856.110 kb on + strand, within BPHYT_RS03795 at 856.110 kb on + strand, within BPHYT_RS03795 at 856.110 kb on + strand, within BPHYT_RS03795 at 856.448 kb on + strand, within BPHYT_RS03795 at 856.794 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.355 kb on + strand at 857.356 kb on - strand at 857.507 kb on - strand at 857.562 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.608 kb on - strand, within BPHYT_RS03800 at 857.798 kb on - strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.989 kb on + strand, within BPHYT_RS03800 at 858.094 kb on + strand, within BPHYT_RS03800 at 858.202 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.218 kb on - strand, within BPHYT_RS03800 at 858.321 kb on + strand, within BPHYT_RS03800 at 858.322 kb on - strand, within BPHYT_RS03800
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 855,072 - BPHYT_RS03790 0.33 +0.5 855,080 + BPHYT_RS03790 0.34 -1.0 855,095 + BPHYT_RS03790 0.35 +0.1 855,207 - BPHYT_RS03790 0.49 +0.2 855,247 + BPHYT_RS03790 0.54 +0.3 855,358 + BPHYT_RS03790 0.67 +0.6 855,358 + BPHYT_RS03790 0.67 +0.1 855,359 - BPHYT_RS03790 0.67 +0.2 855,495 - BPHYT_RS03790 0.83 +0.6 855,635 + -0.1 855,635 + +0.0 855,635 + -0.2 855,636 - +0.6 855,636 - +1.6 855,636 - +0.1 855,636 - -2.0 855,636 - +0.5 855,636 - +0.7 855,636 - -0.4 855,642 - -0.6 855,676 + +0.2 855,677 - -0.1 855,714 + +0.2 855,715 - +0.3 855,715 - -0.2 855,715 - -0.0 855,848 + +0.8 855,848 + +0.6 855,849 - -0.2 855,849 - -0.1 855,871 + +0.1 855,871 + +0.8 855,872 - +0.3 855,872 - -0.5 855,872 - +0.2 855,872 - +0.5 856,110 + BPHYT_RS03795 0.11 -0.3 856,110 + BPHYT_RS03795 0.11 -0.1 856,110 + BPHYT_RS03795 0.11 +0.1 856,448 + BPHYT_RS03795 0.36 +0.4 856,794 + BPHYT_RS03795 0.61 +0.4 857,097 + BPHYT_RS03795 0.83 -0.3 857,097 + BPHYT_RS03795 0.83 -0.1 857,355 + -0.2 857,356 - -2.5 857,507 - +0.9 857,562 + BPHYT_RS03800 0.12 +0.7 857,607 + BPHYT_RS03800 0.15 +1.0 857,607 + BPHYT_RS03800 0.15 -0.2 857,608 - BPHYT_RS03800 0.15 +0.1 857,798 - BPHYT_RS03800 0.30 -0.7 857,833 + BPHYT_RS03800 0.33 -0.1 857,833 + BPHYT_RS03800 0.33 +0.4 857,989 + BPHYT_RS03800 0.45 +0.1 858,094 + BPHYT_RS03800 0.53 -0.0 858,202 + BPHYT_RS03800 0.61 +0.6 858,217 + BPHYT_RS03800 0.62 +0.5 858,217 + BPHYT_RS03800 0.62 -0.4 858,218 - BPHYT_RS03800 0.62 -0.8 858,321 + BPHYT_RS03800 0.70 +0.2 858,322 - BPHYT_RS03800 0.70 +0.1
Or see this region's nucleotide sequence