Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03210 and BPHYT_RS03215 are separated by 837 nucleotides BPHYT_RS03215 and BPHYT_RS03220 are separated by 98 nucleotides
BPHYT_RS03210: BPHYT_RS03210 - cardiolipin synthetase, at 718,758 to 720,017
_RS03210
BPHYT_RS03215: BPHYT_RS03215 - TetR family transcriptional regulator, at 720,855 to 721,454
_RS03215
BPHYT_RS03220: BPHYT_RS03220 - Acyl-CoA dehydrogenase (EC 1.3.8.7) <small>(from data)</small>, at 721,553 to 723,340
_RS03220
Position (kb) 720
721
722 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 719.965 kb on - strand at 720.656 kb on + strand at 720.770 kb on - strand at 720.770 kb on - strand at 720.838 kb on + strand at 720.838 kb on + strand at 721.164 kb on + strand, within BPHYT_RS03215 at 721.185 kb on + strand, within BPHYT_RS03215 at 721.186 kb on - strand, within BPHYT_RS03215 at 721.435 kb on - strand at 721.516 kb on + strand at 721.562 kb on + strand at 721.609 kb on + strand at 721.710 kb on + strand at 721.711 kb on - strand at 721.811 kb on + strand, within BPHYT_RS03220 at 721.811 kb on + strand, within BPHYT_RS03220 at 721.812 kb on - strand, within BPHYT_RS03220 at 721.812 kb on - strand, within BPHYT_RS03220 at 721.934 kb on + strand, within BPHYT_RS03220 at 721.935 kb on - strand, within BPHYT_RS03220 at 721.958 kb on + strand, within BPHYT_RS03220 at 722.003 kb on + strand, within BPHYT_RS03220
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 719,965 - -0.0 720,656 + +0.5 720,770 - +0.4 720,770 - +0.5 720,838 + -2.1 720,838 + -0.9 721,164 + BPHYT_RS03215 0.52 -0.1 721,185 + BPHYT_RS03215 0.55 -1.7 721,186 - BPHYT_RS03215 0.55 -0.7 721,435 - -0.5 721,516 + +2.9 721,562 + +1.6 721,609 + +0.2 721,710 + -0.2 721,711 - +0.6 721,811 + BPHYT_RS03220 0.14 +0.1 721,811 + BPHYT_RS03220 0.14 +1.4 721,812 - BPHYT_RS03220 0.14 +0.1 721,812 - BPHYT_RS03220 0.14 -0.7 721,934 + BPHYT_RS03220 0.21 +0.6 721,935 - BPHYT_RS03220 0.21 +0.2 721,958 + BPHYT_RS03220 0.23 -0.5 722,003 + BPHYT_RS03220 0.25 +0.4
Or see this region's nucleotide sequence