Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02150 and BPHYT_RS02155 are separated by 33 nucleotides BPHYT_RS02155 and BPHYT_RS02160 overlap by 4 nucleotides
BPHYT_RS02150: BPHYT_RS02150 - biotin synthase, at 492,275 to 493,360
_RS02150
BPHYT_RS02155: BPHYT_RS02155 - dithiobiotin synthetase, at 493,394 to 494,137
_RS02155
BPHYT_RS02160: BPHYT_RS02160 - 8-amino-7-oxononanoate synthase, at 494,134 to 495,318
_RS02160
Position (kb) 493
494
495 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 492.778 kb on - strand, within BPHYT_RS02150 at 492.837 kb on + strand, within BPHYT_RS02150 at 492.926 kb on + strand, within BPHYT_RS02150 at 493.374 kb on - strand at 493.383 kb on + strand at 493.384 kb on - strand at 493.384 kb on - strand at 493.395 kb on + strand at 493.521 kb on + strand, within BPHYT_RS02155 at 493.522 kb on - strand, within BPHYT_RS02155 at 493.825 kb on + strand, within BPHYT_RS02155 at 493.825 kb on + strand, within BPHYT_RS02155 at 493.825 kb on + strand, within BPHYT_RS02155 at 493.897 kb on - strand, within BPHYT_RS02155 at 493.964 kb on - strand, within BPHYT_RS02155 at 493.970 kb on + strand, within BPHYT_RS02155 at 494.106 kb on - strand at 494.516 kb on + strand, within BPHYT_RS02160 at 494.859 kb on - strand, within BPHYT_RS02160 at 494.859 kb on - strand, within BPHYT_RS02160 at 494.982 kb on - strand, within BPHYT_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 492,778 - BPHYT_RS02150 0.46 +0.1 492,837 + BPHYT_RS02150 0.52 -4.3 492,926 + BPHYT_RS02150 0.60 -1.6 493,374 - -0.8 493,383 + -1.4 493,384 - +0.1 493,384 - -0.9 493,395 + -0.5 493,521 + BPHYT_RS02155 0.17 -1.1 493,522 - BPHYT_RS02155 0.17 -1.2 493,825 + BPHYT_RS02155 0.58 -1.9 493,825 + BPHYT_RS02155 0.58 -0.9 493,825 + BPHYT_RS02155 0.58 -2.5 493,897 - BPHYT_RS02155 0.68 -1.5 493,964 - BPHYT_RS02155 0.77 +0.0 493,970 + BPHYT_RS02155 0.77 -1.3 494,106 - -0.7 494,516 + BPHYT_RS02160 0.32 -2.7 494,859 - BPHYT_RS02160 0.61 -1.6 494,859 - BPHYT_RS02160 0.61 -1.1 494,982 - BPHYT_RS02160 0.72 -1.8
Or see this region's nucleotide sequence