Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29630

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
6,579,300	+		PFLU_RS29625	0.35	-1.2
6,579,300	+		PFLU_RS29625	0.35	-1.9
6,579,300	+		PFLU_RS29625	0.35	+1.3
6,579,300	+		PFLU_RS29625	0.35	-1.5
6,579,300	+		PFLU_RS29625	0.35	-1.4
6,579,300	+		PFLU_RS29625	0.35	-0.5
6,579,300	+		PFLU_RS29625	0.35	+2.3
6,579,300	+		PFLU_RS29625	0.35	-0.7
6,579,300	+		PFLU_RS29625	0.35	-1.2
6,579,300	+		PFLU_RS29625	0.35	-0.4
6,579,301	-		PFLU_RS29625	0.35	+1.2
6,579,301	-		PFLU_RS29625	0.35	-1.6
6,579,301	-		PFLU_RS29625	0.35	+1.0
6,579,301	-		PFLU_RS29625	0.35	-0.5
6,579,301	-		PFLU_RS29625	0.35	-0.8
6,579,301	-		PFLU_RS29625	0.35	-0.9
6,579,301	-		PFLU_RS29625	0.35	-1.0
6,579,301	-		PFLU_RS29625	0.35	-0.5
6,579,301	-		PFLU_RS29625	0.35	+0.6
6,579,301	-		PFLU_RS29625	0.35	-0.5
6,579,301	-		PFLU_RS29625	0.35	-0.3
6,579,301	-		PFLU_RS29625	0.35	+0.5
6,579,301	-		PFLU_RS29625	0.35	+1.8
6,579,301	-		PFLU_RS29625	0.35	-0.9
6,579,301	-		PFLU_RS29625	0.35	+2.6
6,579,301	-		PFLU_RS29625	0.35	+0.5
6,579,301	-		PFLU_RS29625	0.35	+0.8
6,579,301	-		PFLU_RS29625	0.35	+1.5
6,579,301	-		PFLU_RS29625	0.35	-0.8
6,579,301	-		PFLU_RS29625	0.35	+0.3
6,579,304	+		PFLU_RS29625	0.36	-2.3
6,579,304	+		PFLU_RS29625	0.36	-0.9
6,579,304	+		PFLU_RS29625	0.36	+0.7
6,579,304	+		PFLU_RS29625	0.36	+1.0
6,579,304	+		PFLU_RS29625	0.36	+0.0
6,579,304	+		PFLU_RS29625	0.36	+1.1
6,579,305	-		PFLU_RS29625	0.36	+1.4
6,579,305	-		PFLU_RS29625	0.36	-2.8
6,579,305	-		PFLU_RS29625	0.36	-2.0
6,579,305	-		PFLU_RS29625	0.36	+0.2
6,579,305	-		PFLU_RS29625	0.36	+0.3
6,579,305	-		PFLU_RS29625	0.36	-2.0
6,579,305	-		PFLU_RS29625	0.36	-0.0
6,579,305	-		PFLU_RS29625	0.36	-1.3
6,579,305	-		PFLU_RS29625	0.36	-1.2
6,579,639	+		PFLU_RS29625	0.69	+2.3
6,579,639	+		PFLU_RS29625	0.69	+0.7
6,579,639	+		PFLU_RS29625	0.69	-1.3
6,579,639	+		PFLU_RS29625	0.69	-2.7
6,579,639	+		PFLU_RS29625	0.69	+2.8
6,579,640	-		PFLU_RS29625	0.69	-0.5
6,579,640	-		PFLU_RS29625	0.69	-1.2
6,579,806	+		PFLU_RS29625	0.85	+0.7
6,579,806	+		PFLU_RS29625	0.85	-0.9
6,579,806	+		PFLU_RS29625	0.85	+3.4
6,579,806	+		PFLU_RS29625	0.85	-0.7
6,579,806	+		PFLU_RS29625	0.85	-0.7
6,579,806	+		PFLU_RS29625	0.85	-0.0
6,579,806	+		PFLU_RS29625	0.85	+0.7
6,579,806	+		PFLU_RS29625	0.85	-1.3
6,579,807	-		PFLU_RS29625	0.85	-1.4
6,579,807	-		PFLU_RS29625	0.85	+0.5
6,579,807	-		PFLU_RS29625	0.85	+0.9
6,579,807	-		PFLU_RS29625	0.85	-1.5
6,579,807	-		PFLU_RS29625	0.85	+3.2
6,579,807	-		PFLU_RS29625	0.85	-0.2
6,579,807	-		PFLU_RS29625	0.85	-0.2
6,579,807	-		PFLU_RS29625	0.85	+2.5
6,579,807	-		PFLU_RS29625	0.85	-1.6
6,579,809	+		PFLU_RS29625	0.85	-2.0
6,579,809	+		PFLU_RS29625	0.85	-0.7
6,579,809	+		PFLU_RS29625	0.85	-0.7
6,579,810	-		PFLU_RS29625	0.85	-0.8
6,579,810	-		PFLU_RS29625	0.85	-2.0
6,579,810	-		PFLU_RS29625	0.85	+2.0
6,579,810	-		PFLU_RS29625	0.85	-1.5
6,579,810	-		PFLU_RS29625	0.85	-1.3
6,579,957	-				-0.0
6,579,976	+				+3.3
6,579,976	+				-1.3
6,579,976	+				-2.0
6,579,976	+				+2.6
6,579,976	+				+0.1
6,579,977	-				+1.4
6,580,076	+		PFLU_RS29630	0.12	+0.5
6,580,091	+		PFLU_RS29630	0.15	-1.6
6,580,092	-		PFLU_RS29630	0.16	-0.4
6,580,092	-		PFLU_RS29630	0.16	-1.9
6,580,213	+		PFLU_RS29630	0.39	-0.2
6,580,214	-		PFLU_RS29630	0.40	+0.3
6,580,252	-		PFLU_RS29630	0.47	-0.4
6,580,263	+		PFLU_RS29630	0.49	+0.7
6,580,412	+		PFLU_RS29630	0.79	-1.3
6,580,412	+		PFLU_RS29630	0.79	-1.0
6,580,412	+		PFLU_RS29630	0.79	-0.3
6,580,412	+		PFLU_RS29630	0.79	+3.1
6,580,412	+		PFLU_RS29630	0.79	+2.2
6,580,412	+		PFLU_RS29630	0.79	+0.3
6,580,412	+		PFLU_RS29630	0.79	-0.3
6,580,412	+		PFLU_RS29630	0.79	+1.1
6,580,412	+		PFLU_RS29630	0.79	-1.5
6,580,412	+		PFLU_RS29630	0.79	+1.5
6,580,413	-		PFLU_RS29630	0.79	-0.3
6,580,413	-		PFLU_RS29630	0.79	-2.7
6,580,413	-		PFLU_RS29630	0.79	+0.4
6,580,413	-		PFLU_RS29630	0.79	+1.3
6,580,413	-		PFLU_RS29630	0.79	-2.2
6,580,413	-		PFLU_RS29630	0.79	-0.9
6,580,413	-		PFLU_RS29630	0.79	+0.3
6,580,413	-		PFLU_RS29630	0.79	+0.2
6,580,413	-		PFLU_RS29630	0.79	-0.2
6,580,413	-		PFLU_RS29630	0.79	+1.0
6,580,413	-		PFLU_RS29630	0.79	-2.7
6,580,413	-		PFLU_RS29630	0.79	+1.3
6,580,413	-		PFLU_RS29630	0.79	-2.2
6,580,413	-		PFLU_RS29630	0.79	-1.2
6,580,413	-		PFLU_RS29630	0.79	-2.0
6,580,413	-		PFLU_RS29630	0.79	-2.8
6,580,444	+		PFLU_RS29630	0.85	+1.2
6,580,517	+				+2.3
6,580,518	-				+1.1
6,580,831	+		PFLU_RS29635	0.21	+1.6
6,580,831	+		PFLU_RS29635	0.21	+2.3
6,580,831	+		PFLU_RS29635	0.21	-1.2
6,580,831	+		PFLU_RS29635	0.21	-0.7
6,580,831	+		PFLU_RS29635	0.21	+0.3
6,580,831	+		PFLU_RS29635	0.21	+3.2
6,580,832	-		PFLU_RS29635	0.21	-1.8
6,580,832	-		PFLU_RS29635	0.21	-0.9
6,580,832	-		PFLU_RS29635	0.21	-0.2
6,580,832	-		PFLU_RS29635	0.21	-0.8
6,580,832	-		PFLU_RS29635	0.21	+1.3
6,580,832	-		PFLU_RS29635	0.21	-2.4
6,580,832	-		PFLU_RS29635	0.21	+0.4
6,580,832	-		PFLU_RS29635	0.21	-0.5
6,580,832	-		PFLU_RS29635	0.21	-1.6
6,580,832	-		PFLU_RS29635	0.21	-1.0
6,580,832	-		PFLU_RS29635	0.21	-1.2
6,580,832	-		PFLU_RS29635	0.21	+0.1
6,580,832	-		PFLU_RS29635	0.21	-0.4
6,580,832	-		PFLU_RS29635	0.21	-0.9
6,580,832	-		PFLU_RS29635	0.21	-1.9
6,580,832	-		PFLU_RS29635	0.21	-0.9
6,580,966	+		PFLU_RS29635	0.30	+2.8
6,580,966	+		PFLU_RS29635	0.30	+1.3
6,580,966	+		PFLU_RS29635	0.30	-0.9
6,580,966	+		PFLU_RS29635	0.30	+0.3
6,580,966	+		PFLU_RS29635	0.30	-1.0
6,580,966	+		PFLU_RS29635	0.30	-2.4
6,580,966	+		PFLU_RS29635	0.30	+0.3
6,580,966	+		PFLU_RS29635	0.30	+0.2
6,580,966	+		PFLU_RS29635	0.30	+1.1
6,580,967	-		PFLU_RS29635	0.30	-0.5
6,580,967	-		PFLU_RS29635	0.30	+2.9
6,580,967	-		PFLU_RS29635	0.30	-1.7
6,580,967	-		PFLU_RS29635	0.30	+2.1
6,580,967	-		PFLU_RS29635	0.30	-3.1
6,580,967	-		PFLU_RS29635	0.30	-1.0
6,580,967	-		PFLU_RS29635	0.30	+2.0
6,580,967	-		PFLU_RS29635	0.30	-1.5
6,580,967	-		PFLU_RS29635	0.30	-0.3
6,580,967	-		PFLU_RS29635	0.30	+0.9
6,580,967	-		PFLU_RS29635	0.30	+0.9
6,580,967	-		PFLU_RS29635	0.30	-0.9
6,580,979	-		PFLU_RS29635	0.30	-2.0
6,581,023	+		PFLU_RS29635	0.33	-2.9
6,581,023	+		PFLU_RS29635	0.33	-2.4
6,581,023	+		PFLU_RS29635	0.33	+1.8
6,581,024	-		PFLU_RS29635	0.33	-1.4
6,581,024	-		PFLU_RS29635	0.33	+1.9
6,581,024	-		PFLU_RS29635	0.33	-0.5
6,581,024	-		PFLU_RS29635	0.33	-0.5
6,581,024	-		PFLU_RS29635	0.33	-1.2
6,581,026	+		PFLU_RS29635	0.34	-0.7
6,581,026	+		PFLU_RS29635	0.34	-0.7
6,581,026	+		PFLU_RS29635	0.34	+1.5
6,581,026	+		PFLU_RS29635	0.34	-1.5
6,581,026	+		PFLU_RS29635	0.34	+0.0
6,581,026	+		PFLU_RS29635	0.34	-1.7
6,581,026	+		PFLU_RS29635	0.34	-2.0
6,581,026	+		PFLU_RS29635	0.34	+0.8
6,581,027	-		PFLU_RS29635	0.34	+2.0
6,581,027	-		PFLU_RS29635	0.34	-3.8
6,581,027	-		PFLU_RS29635	0.34	+0.2
6,581,027	-		PFLU_RS29635	0.34	+1.1
6,581,027	-		PFLU_RS29635	0.34	+2.1
6,581,027	-		PFLU_RS29635	0.34	-0.9
6,581,197	+		PFLU_RS29635	0.45	+1.0
6,581,197	+		PFLU_RS29635	0.45	+1.5
6,581,198	-		PFLU_RS29635	0.45	-0.9
6,581,239	+		PFLU_RS29635	0.48	-1.2
6,581,239	+		PFLU_RS29635	0.48	+0.7
6,581,239	+		PFLU_RS29635	0.48	+0.7
6,581,239	+		PFLU_RS29635	0.48	-2.3
6,581,239	+		PFLU_RS29635	0.48	-1.7
6,581,239	+		PFLU_RS29635	0.48	-1.6
6,581,239	+		PFLU_RS29635	0.48	+1.3
6,581,353	+		PFLU_RS29635	0.55	-2.0
6,581,353	+		PFLU_RS29635	0.55	-0.5
6,581,353	+		PFLU_RS29635	0.55	+1.6
6,581,354	-		PFLU_RS29635	0.55	-0.6
6,581,354	-		PFLU_RS29635	0.55	+0.7
6,581,354	-		PFLU_RS29635	0.55	-1.0
6,581,354	-		PFLU_RS29635	0.55	+1.0
6,581,354	-		PFLU_RS29635	0.55	-0.0
6,581,413	+		PFLU_RS29635	0.59	-1.4
6,581,414	-		PFLU_RS29635	0.59	+1.9
6,581,414	-		PFLU_RS29635	0.59	+0.8