Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28205

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
6,280,279	+		PFLU_RS28195	0.90	-2.3
6,280,279	+		PFLU_RS28195	0.90	-0.7
6,280,280	-		PFLU_RS28195	0.90	+1.7
6,280,280	-		PFLU_RS28195	0.90	-1.2
6,280,280	-		PFLU_RS28195	0.90	+0.3
6,280,280	-		PFLU_RS28195	0.90	+1.0
6,280,280	-		PFLU_RS28195	0.90	-1.5
6,280,280	-		PFLU_RS28195	0.90	+0.7
6,280,280	-		PFLU_RS28195	0.90	+2.1
6,280,294	+				-2.3
6,280,294	+				-1.4
6,280,294	+				-2.1
6,280,294	+				-1.7
6,280,294	+				-1.8
6,280,294	+				-1.1
6,280,294	+				+1.4
6,280,294	+				-1.2
6,280,294	+				+1.3
6,280,295	-				-0.7
6,280,295	-				+2.3
6,280,424	-				+3.5
6,280,424	-				-1.1
6,280,424	-				-0.1
6,280,426	+				+1.8
6,280,427	-				-1.5
6,280,438	+				-0.1
6,280,438	+				-2.3
6,280,439	-				-0.3
6,280,439	-				-1.3
6,280,497	+				-1.9
6,280,552	+		PFLU_RS28200	0.10	+1.3
6,280,552	+		PFLU_RS28200	0.10	-3.0
6,280,552	+		PFLU_RS28200	0.10	+0.3
6,280,552	+		PFLU_RS28200	0.10	-1.3
6,280,552	+		PFLU_RS28200	0.10	-0.3
6,280,552	+		PFLU_RS28200	0.10	-2.4
6,280,552	+		PFLU_RS28200	0.10	-0.5
6,280,552	+		PFLU_RS28200	0.10	+1.9
6,280,552	+		PFLU_RS28200	0.10	-0.7
6,280,552	+		PFLU_RS28200	0.10	+0.7
6,280,552	+		PFLU_RS28200	0.10	+0.8
6,280,552	+		PFLU_RS28200	0.10	+3.8
6,280,552	+		PFLU_RS28200	0.10	-1.1
6,280,552	+		PFLU_RS28200	0.10	-2.7
6,280,552	+		PFLU_RS28200	0.10	-1.2
6,280,552	+		PFLU_RS28200	0.10	+1.1
6,280,553	-		PFLU_RS28200	0.11	-2.1
6,280,553	-		PFLU_RS28200	0.11	+0.1
6,280,553	-		PFLU_RS28200	0.11	+1.1
6,280,553	-		PFLU_RS28200	0.11	-0.4
6,280,553	-		PFLU_RS28200	0.11	+2.3
6,280,553	-		PFLU_RS28200	0.11	+3.8
6,280,553	-		PFLU_RS28200	0.11	+2.4
6,280,553	-		PFLU_RS28200	0.11	+0.8
6,280,553	-		PFLU_RS28200	0.11	-0.1
6,280,553	-		PFLU_RS28200	0.11	-1.3
6,280,553	-		PFLU_RS28200	0.11	-1.3
6,280,553	-		PFLU_RS28200	0.11	+2.4
6,280,553	-		PFLU_RS28200	0.11	+0.8
6,280,553	-		PFLU_RS28200	0.11	-0.7
6,280,553	-		PFLU_RS28200	0.11	+0.9
6,280,553	-		PFLU_RS28200	0.11	-2.5
6,280,553	-		PFLU_RS28200	0.11	-0.5
6,280,553	-		PFLU_RS28200	0.11	+2.0
6,280,710	+		PFLU_RS28200	0.32	+1.0
6,281,194	+				+0.7
6,281,194	+				-1.9
6,281,194	+				-0.1
6,281,194	+				+1.3
6,281,194	+				+1.1
6,281,195	-				-1.3
6,281,195	-				+0.5
6,281,195	-				+0.8
6,281,195	-				+0.3
6,281,195	-				-0.5
6,281,223	+				-1.1
6,281,223	+				-1.8
6,281,223	+				-1.2
6,281,223	+				-1.7
6,281,223	+				-0.9
6,281,224	-				+0.8
6,281,224	-				+1.6
6,281,224	-				+0.8
6,281,224	-				-2.3
6,281,224	-				-0.4
6,281,259	+				-0.5
6,281,259	+				-1.6
6,281,259	+				+1.3
6,281,339	+		PFLU_RS28205	0.12	+2.3
6,281,340	-		PFLU_RS28205	0.13	+1.4
6,281,366	+		PFLU_RS28205	0.15	-1.4
6,281,367	-		PFLU_RS28205	0.16	+2.0
6,281,435	+		PFLU_RS28205	0.23	+1.1
6,281,435	+		PFLU_RS28205	0.23	+1.5
6,281,436	-		PFLU_RS28205	0.23	+2.2
6,281,436	-		PFLU_RS28205	0.23	-0.9
6,281,436	-		PFLU_RS28205	0.23	+0.6
6,281,528	+		PFLU_RS28205	0.33	+3.0
6,281,528	+		PFLU_RS28205	0.33	-1.7
6,281,528	+		PFLU_RS28205	0.33	-0.7
6,281,528	+		PFLU_RS28205	0.33	-1.1
6,281,528	+		PFLU_RS28205	0.33	+1.9
6,281,528	+		PFLU_RS28205	0.33	-0.9
6,281,528	+		PFLU_RS28205	0.33	+3.0
6,281,529	-		PFLU_RS28205	0.33	-0.5
6,281,529	-		PFLU_RS28205	0.33	+3.0
6,281,529	-		PFLU_RS28205	0.33	-2.5
6,281,529	-		PFLU_RS28205	0.33	-2.5
6,281,529	-		PFLU_RS28205	0.33	+3.8
6,281,529	-		PFLU_RS28205	0.33	+2.0
6,281,529	-		PFLU_RS28205	0.33	-0.7
6,281,529	-		PFLU_RS28205	0.33	+0.7
6,281,529	-		PFLU_RS28205	0.33	+1.1
6,281,529	-		PFLU_RS28205	0.33	-0.3
6,281,529	-		PFLU_RS28205	0.33	+2.2
6,281,529	-		PFLU_RS28205	0.33	-2.2
6,281,529	-		PFLU_RS28205	0.33	-0.7
6,281,529	-		PFLU_RS28205	0.33	-0.5
6,281,529	-		PFLU_RS28205	0.33	-2.2
6,281,529	-		PFLU_RS28205	0.33	-1.3
6,281,601	+		PFLU_RS28205	0.41	-1.3
6,281,601	+		PFLU_RS28205	0.41	+2.6
6,281,601	+		PFLU_RS28205	0.41	-1.8
6,281,601	+		PFLU_RS28205	0.41	-0.5
6,281,601	+		PFLU_RS28205	0.41	-2.0
6,281,601	+		PFLU_RS28205	0.41	+2.3
6,281,601	+		PFLU_RS28205	0.41	-0.3
6,281,602	-		PFLU_RS28205	0.42	+0.6
6,281,602	-		PFLU_RS28205	0.42	-1.1
6,281,602	-		PFLU_RS28205	0.42	-1.5
6,281,602	-		PFLU_RS28205	0.42	+0.8
6,281,602	-		PFLU_RS28205	0.42	-1.9
6,281,602	-		PFLU_RS28205	0.42	+0.4
6,281,602	-		PFLU_RS28205	0.42	+0.5
6,281,624	+		PFLU_RS28205	0.44	-1.4
6,281,624	+		PFLU_RS28205	0.44	-1.3
6,281,624	+		PFLU_RS28205	0.44	+0.3
6,281,625	-		PFLU_RS28205	0.44	-0.8
6,281,625	-		PFLU_RS28205	0.44	+2.5
6,281,625	-		PFLU_RS28205	0.44	-0.9
6,281,625	-		PFLU_RS28205	0.44	-0.3
6,281,625	-		PFLU_RS28205	0.44	+0.2
6,281,668	+		PFLU_RS28205	0.49	+1.4
6,281,668	+		PFLU_RS28205	0.49	-2.1
6,281,668	+		PFLU_RS28205	0.49	+0.3
6,281,668	+		PFLU_RS28205	0.49	+0.7
6,281,668	+		PFLU_RS28205	0.49	-1.1
6,281,668	+		PFLU_RS28205	0.49	+0.2
6,281,668	+		PFLU_RS28205	0.49	-1.8
6,281,668	+		PFLU_RS28205	0.49	-1.1
6,281,668	+		PFLU_RS28205	0.49	+1.0
6,281,668	+		PFLU_RS28205	0.49	-0.9
6,281,668	+		PFLU_RS28205	0.49	-0.7
6,281,668	+		PFLU_RS28205	0.49	+0.9
6,281,668	+		PFLU_RS28205	0.49	+2.6
6,281,669	-		PFLU_RS28205	0.49	-0.3
6,281,669	-		PFLU_RS28205	0.49	+1.0
6,281,669	-		PFLU_RS28205	0.49	+4.2
6,281,669	-		PFLU_RS28205	0.49	+3.5
6,281,669	-		PFLU_RS28205	0.49	-1.7
6,281,741	+		PFLU_RS28205	0.57	-1.5
6,281,741	+		PFLU_RS28205	0.57	-3.1
6,281,742	-		PFLU_RS28205	0.57	-0.5
6,281,742	-		PFLU_RS28205	0.57	+0.5
6,281,742	-		PFLU_RS28205	0.57	+1.1
6,281,742	-		PFLU_RS28205	0.57	+2.0
6,281,742	-		PFLU_RS28205	0.57	+2.6
6,281,742	-		PFLU_RS28205	0.57	+1.3
6,281,742	-		PFLU_RS28205	0.57	-0.9
6,281,742	-		PFLU_RS28205	0.57	+0.3
6,281,742	-		PFLU_RS28205	0.57	-2.4
6,281,745	+		PFLU_RS28205	0.57	+2.8
6,281,746	-		PFLU_RS28205	0.57	+3.0
6,281,746	-		PFLU_RS28205	0.57	-0.7
6,281,746	-		PFLU_RS28205	0.57	-0.3
6,281,746	-		PFLU_RS28205	0.57	-0.6
6,281,746	-		PFLU_RS28205	0.57	+0.3
6,281,746	-		PFLU_RS28205	0.57	+2.2
6,281,746	-		PFLU_RS28205	0.57	-0.4
6,281,796	+		PFLU_RS28205	0.63	+2.2
6,281,797	-		PFLU_RS28205	0.63	+3.1
6,281,797	-		PFLU_RS28205	0.63	+1.2
6,281,797	-		PFLU_RS28205	0.63	-0.3
6,281,797	-		PFLU_RS28205	0.63	+1.3
6,281,867	+		PFLU_RS28205	0.71	+1.1
6,281,867	+		PFLU_RS28205	0.71	+0.3
6,281,867	+		PFLU_RS28205	0.71	-2.3
6,281,867	+		PFLU_RS28205	0.71	-0.1
6,281,867	+		PFLU_RS28205	0.71	+0.2
6,281,867	+		PFLU_RS28205	0.71	-1.5
6,281,868	-		PFLU_RS28205	0.71	-1.2
6,281,868	-		PFLU_RS28205	0.71	+0.1
6,281,942	+		PFLU_RS28205	0.79	+2.6
6,281,943	-		PFLU_RS28205	0.79	-1.3
6,281,964	+		PFLU_RS28205	0.82	-0.3
6,281,975	+		PFLU_RS28205	0.83	+0.2
6,281,976	-		PFLU_RS28205	0.83	+1.4
6,281,976	-		PFLU_RS28205	0.83	+0.8
6,281,976	-		PFLU_RS28205	0.83	-1.4
6,281,976	-		PFLU_RS28205	0.83	+0.6
6,282,133	+				+0.5
6,282,133	+				-0.3
6,282,134	-				-1.1
6,282,134	-				-2.0
6,282,134	-				-1.7
6,282,308	+		PFLU_RS28210	0.44	+0.8
6,282,308	+		PFLU_RS28210	0.44	-1.2
6,282,308	+		PFLU_RS28210	0.44	-0.3
6,282,308	+		PFLU_RS28210	0.44	-2.6
6,282,308	+		PFLU_RS28210	0.44	-1.4
6,282,308	+		PFLU_RS28210	0.44	+3.6
6,282,308	+		PFLU_RS28210	0.44	-0.1
6,282,309	-		PFLU_RS28210	0.44	-1.4
6,282,508	+				+0.9
6,282,508	+				+0.0
6,282,508	+				+1.4
6,282,508	+				+0.7
6,282,508	+				+0.4
6,282,508	+				+0.9
6,282,508	+				-0.9
6,282,508	+				+1.6
6,282,508	+				+0.3
6,282,508	+				-0.7
6,282,508	+				+0.4
6,282,508	+				+2.2
6,282,508	+				-1.8
6,282,508	+				-0.1
6,282,508	+				-1.4
6,282,508	+				+1.4
6,282,508	+				-1.2
6,282,508	+				+0.0
6,282,508	+				+1.3
6,282,508	+				+0.5
6,282,508	+				-2.3
6,282,508	+				-1.8
6,282,508	+				-0.7
6,282,508	+				-0.7
6,282,508	+				-1.1
6,282,508	+				+0.8
6,282,509	-				+3.0
6,282,509	-				-0.7
6,282,509	-				-0.1
6,282,509	-				+3.1
6,282,509	-				-1.9
6,282,509	-				+0.0
6,282,509	-				+0.9
6,282,509	-				+2.0
6,282,509	-				+1.3
6,282,509	-				+0.2
6,282,509	-				+2.1
6,282,509	-				+1.3
6,282,509	-				+1.8
6,282,509	-				+0.9
6,282,509	-				-2.6
6,282,509	-				-2.2
6,282,509	-				+2.7
6,282,509	-				+0.3
6,282,509	-				-1.5
6,282,509	-				-2.7
6,282,509	-				+1.1
6,282,509	-				+0.3
6,282,509	-				-2.7
6,282,509	-				+4.3
6,282,509	-				+0.9
6,282,509	-				-0.1
6,282,509	-				+1.7
6,282,509	-				+0.1
6,282,509	-				+0.7
6,282,509	-				+0.1
6,282,509	-				-1.6
6,282,509	-				+0.7
6,282,509	-				-1.7
6,282,509	-				-0.7
6,282,509	-				+0.7
6,282,509	-				+1.7
6,282,509	-				-0.9
6,282,544	+				+2.6
6,282,544	+				+0.7
6,282,544	+				+2.5
6,282,544	+				+0.5
6,282,544	+				+0.7
6,282,544	+				+0.4
6,282,545	-				+0.7
6,282,545	-				-1.7
6,282,545	-				-1.0
6,282,545	-				-1.6
6,282,545	-				-1.4
6,282,644	+		PFLU_RS28215	0.11	+0.7
6,282,644	+		PFLU_RS28215	0.11	+1.5
6,282,644	+		PFLU_RS28215	0.11	-1.7
6,282,644	+		PFLU_RS28215	0.11	-1.8
6,282,644	+		PFLU_RS28215	0.11	+2.4
6,282,644	+		PFLU_RS28215	0.11	+0.7
6,282,644	+		PFLU_RS28215	0.11	+2.5
6,282,644	+		PFLU_RS28215	0.11	+0.0
6,282,644	+		PFLU_RS28215	0.11	-0.4
6,282,644	+		PFLU_RS28215	0.11	-0.5
6,282,644	+		PFLU_RS28215	0.11	+1.3
6,282,645	-		PFLU_RS28215	0.11	+1.7
6,282,645	-		PFLU_RS28215	0.11	-2.1
6,282,645	-		PFLU_RS28215	0.11	-2.0
6,282,645	-		PFLU_RS28215	0.11	-0.6
6,282,645	-		PFLU_RS28215	0.11	-1.3
6,282,645	-		PFLU_RS28215	0.11	-1.5
6,282,645	-		PFLU_RS28215	0.11	-1.7
6,282,645	-		PFLU_RS28215	0.11	-1.9
6,282,645	-		PFLU_RS28215	0.11	+2.3
6,282,645	-		PFLU_RS28215	0.11	+0.7
6,282,654	+		PFLU_RS28215	0.11	+2.3
6,282,730	-		PFLU_RS28215	0.18	+2.5
6,282,861	+		PFLU_RS28215	0.28	+0.7
6,282,861	+		PFLU_RS28215	0.28	-0.5
6,282,862	-		PFLU_RS28215	0.28	-1.5
6,282,880	-		PFLU_RS28215	0.30	-0.8
6,282,940	-		PFLU_RS28215	0.35	-2.2
6,282,940	-		PFLU_RS28215	0.35	+1.2