Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22055

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
4,962,392	+				-1.1
4,962,393	-				-1.6
4,962,393	-				-0.2
4,962,477	+				+0.8
4,963,240	-				-1.5
4,963,240	-				-1.0
4,963,240	-				+0.3
4,963,313	+				-0.5
4,963,314	-				+1.3
4,963,314	-				-0.1
4,963,410	+				+1.1
4,963,410	+				+1.7
4,963,410	+				-1.5
4,963,410	+				-0.6
4,963,410	+				+2.9
4,963,410	+				-1.7
4,963,411	-				+1.6
4,963,411	-				+1.7
4,963,411	-				+3.7
4,963,411	-				+1.5
4,963,411	-				+2.8
4,963,411	-				+1.0
4,963,411	-				+0.1
4,963,411	-				+1.0
4,963,411	-				+1.1
4,963,412	+				+1.1
4,963,412	+				-0.2
4,963,412	+				-2.3
4,963,412	+				-1.0
4,963,412	+				-1.0
4,963,412	+				+2.1
4,963,412	+				-1.9
4,963,412	+				-1.8
4,963,412	+				-0.2
4,963,412	+				-1.2
4,963,412	+				-0.2
4,963,412	+				-2.3
4,963,412	+				-1.5
4,963,412	+				+2.1
4,963,412	+				-0.7
4,963,412	+				+2.4
4,963,412	+				+0.0
4,963,412	+				+1.3
4,963,412	+				+2.5
4,963,412	+				-1.2
4,963,412	+				+3.1
4,963,412	+				-1.2
4,963,412	+				-1.0
4,963,412	+				+0.5
4,963,412	+				-0.7
4,963,412	+				+0.1
4,963,412	+				+1.5
4,963,412	+				+2.5
4,963,412	+				+0.5
4,963,412	+				+0.9
4,963,412	+				+1.7
4,963,412	+				-1.0
4,963,412	+				-0.9
4,963,412	+				-0.9
4,963,412	+				-0.9
4,963,412	+				+0.4
4,963,413	-				+2.9
4,963,413	-				-2.4
4,963,413	-				+3.1
4,963,413	-				+1.5
4,963,413	-				+1.8
4,963,413	-				+1.8
4,963,413	-				-1.5
4,963,413	-				-0.5
4,963,413	-				+1.4
4,963,413	-				+1.8
4,963,413	-				+1.5
4,963,413	-				-0.4
4,963,413	-				+1.5
4,963,413	-				-1.2
4,963,413	-				+0.1
4,963,413	-				-1.7
4,963,413	-				-2.6
4,963,413	-				-1.8
4,963,413	-				-1.2
4,963,413	-				-3.0
4,963,413	-				-0.9
4,963,413	-				+1.2
4,963,413	-				+1.9
4,963,413	-				+2.1
4,963,413	-				-0.9
4,963,413	-				-1.3
4,963,413	-				-1.9
4,963,413	-				-0.5
4,963,413	-				-1.2
4,963,413	-				-1.5
4,963,413	-				-2.2
4,963,413	-				+2.4
4,963,413	-				-1.0
4,963,413	-				-1.8
4,963,413	-				+2.2
4,963,413	-				+1.6
4,963,413	-				-2.3
4,963,413	-				-1.9
4,963,413	-				-0.7
4,963,430	+				-1.3
4,963,430	+				+1.4
4,963,430	+				+2.0
4,963,430	+				-1.3
4,963,430	+				-0.5
4,963,430	+				-1.2
4,963,431	-				-1.0
4,963,431	-				-1.6
4,963,431	-				-1.2
4,963,431	-				+1.0
4,963,431	-				-1.6
4,963,431	-				+2.4
4,963,431	-				-1.0
4,963,431	-				+1.3
4,963,573	+		PFLU_RS22055	0.18	+2.1
4,963,573	+		PFLU_RS22055	0.18	-0.6
4,963,574	-		PFLU_RS22055	0.18	-1.2
4,963,718	+		PFLU_RS22055	0.31	-1.0
4,963,718	+		PFLU_RS22055	0.31	+1.5
4,963,718	+		PFLU_RS22055	0.31	+0.1
4,963,718	+		PFLU_RS22055	0.31	-1.7
4,963,718	+		PFLU_RS22055	0.31	-2.4
4,963,718	+		PFLU_RS22055	0.31	+0.9
4,963,719	-		PFLU_RS22055	0.31	+1.8
4,963,719	-		PFLU_RS22055	0.31	+2.6
4,963,719	-		PFLU_RS22055	0.31	-0.1
4,963,719	-		PFLU_RS22055	0.31	-0.0
4,963,719	-		PFLU_RS22055	0.31	+0.9
4,963,719	-		PFLU_RS22055	0.31	+1.7
4,963,719	-		PFLU_RS22055	0.31	-2.1
4,963,799	+		PFLU_RS22055	0.39	+0.1
4,963,799	+		PFLU_RS22055	0.39	+1.1
4,963,799	+		PFLU_RS22055	0.39	-0.1
4,963,799	+		PFLU_RS22055	0.39	+0.6
4,963,800	-		PFLU_RS22055	0.39	+3.3
4,963,800	-		PFLU_RS22055	0.39	+2.1
4,963,800	-		PFLU_RS22055	0.39	-2.3
4,963,800	-		PFLU_RS22055	0.39	+3.9
4,963,800	-		PFLU_RS22055	0.39	+1.3
4,963,958	+		PFLU_RS22055	0.53	+1.1
4,963,958	+		PFLU_RS22055	0.53	+3.2
4,963,958	+		PFLU_RS22055	0.53	-1.3
4,963,959	-		PFLU_RS22055	0.54	+3.7
4,963,959	-		PFLU_RS22055	0.54	-2.3
4,963,959	-		PFLU_RS22055	0.54	+0.5
4,963,959	-		PFLU_RS22055	0.54	+2.1
4,963,959	-		PFLU_RS22055	0.54	+0.4
4,964,128	+		PFLU_RS22055	0.69	-1.2
4,964,128	+		PFLU_RS22055	0.69	+3.7
4,964,128	+		PFLU_RS22055	0.69	+3.3
4,964,129	-		PFLU_RS22055	0.69	-1.2
4,964,129	-		PFLU_RS22055	0.69	-0.9
4,964,129	-		PFLU_RS22055	0.69	-1.3
4,964,129	-		PFLU_RS22055	0.69	-0.2
4,964,133	+		PFLU_RS22055	0.70	-1.6
4,964,133	+		PFLU_RS22055	0.70	-0.7
4,964,133	+		PFLU_RS22055	0.70	+4.4
4,964,134	-		PFLU_RS22055	0.70	-1.5
4,964,195	+		PFLU_RS22055	0.76	-1.9
4,964,195	+		PFLU_RS22055	0.76	+1.6
4,964,253	+		PFLU_RS22055	0.81	-0.7
4,964,262	+		PFLU_RS22055	0.82	+3.8
4,964,263	-		PFLU_RS22055	0.82	+1.9
4,964,263	-		PFLU_RS22055	0.82	-1.0
4,964,263	-		PFLU_RS22055	0.82	-1.3
4,964,263	-		PFLU_RS22055	0.82	+2.0
4,964,346	-		PFLU_RS22055	0.90	+0.2
4,964,346	-		PFLU_RS22055	0.90	+1.5
4,964,346	-		PFLU_RS22055	0.90	+1.2
4,964,457	+				-0.4
4,964,457	+				+0.9
4,964,457	+				+1.3
4,964,457	+				-1.2
4,964,457	+				-1.2
4,964,457	+				+3.2
4,964,457	+				-0.5
4,964,457	+				+1.9
4,964,457	+				-0.5
4,964,458	-				+0.5
4,964,458	-				+0.6
4,964,458	-				+1.5
4,964,458	-				+0.1
4,964,458	-				+0.9
4,964,458	-				-2.6
4,964,459	+				-2.2
4,964,459	+				-2.0
4,964,459	+				+1.3
4,964,459	+				-0.9
4,964,459	+				-0.7
4,964,459	+				+1.7
4,964,459	+				+1.5
4,964,459	+				-0.7
4,964,459	+				-0.9
4,964,459	+				+2.5
4,964,459	+				+2.5
4,964,459	+				-0.0
4,964,459	+				+1.5
4,964,459	+				+1.0
4,964,459	+				+1.1
4,964,459	+				-0.9
4,964,459	+				+3.5
4,964,459	+				-1.1
4,964,459	+				-1.3
4,964,459	+				+4.0
4,964,459	+				+1.0
4,964,459	+				-0.7
4,964,459	+				+0.5
4,964,459	+				+3.8
4,964,460	-				-0.2
4,964,460	-				-0.9
4,964,460	-				-0.9
4,964,460	-				-2.5
4,964,460	-				-1.3
4,964,460	-				-0.2
4,964,460	-				-0.2
4,964,460	-				-1.3
4,964,460	-				-0.5
4,964,460	-				-2.3
4,964,460	-				-1.2
4,964,460	-				-2.8
4,964,460	-				+3.7
4,964,460	-				+3.1
4,964,460	-				+1.1
4,964,460	-				-3.2
4,964,460	-				+1.9
4,964,460	-				-2.2
4,964,460	-				-0.9
4,964,460	-				+1.5
4,964,460	-				-1.9
4,964,460	-				+0.5
4,964,460	-				-1.5
4,964,460	-				+3.4
4,964,460	-				-2.4
4,964,460	-				-1.0
4,964,460	-				-0.5
4,964,460	-				-1.7
4,964,460	-				-1.6
4,964,471	+				-1.2
4,964,471	+				+0.2
4,964,471	+				+2.9
4,964,471	+				+1.1
4,964,471	+				+2.3
4,964,471	+				-0.5
4,964,471	+				+2.5
4,964,471	+				+1.5
4,964,471	+				-1.0
4,964,471	+				+1.1
4,964,471	+				+0.8
4,964,471	+				+4.7
4,964,471	+				+1.1
4,964,471	+				-0.0
4,964,471	+				+0.3
4,964,471	+				-2.0
4,964,471	+				+0.4
4,964,471	+				+2.9
4,964,471	+				-0.2
4,964,471	+				+0.4
4,964,471	+				-0.2
4,964,471	+				-1.5
4,964,471	+				-0.9
4,964,471	+				+1.1
4,964,471	+				-1.2
4,964,472	-				+1.5
4,964,472	-				-1.0
4,964,472	-				-1.8
4,964,472	-				+0.9
4,964,472	-				+0.1
4,964,472	-				+1.6
4,964,472	-				-1.2
4,964,472	-				+0.3
4,964,472	-				-0.9
4,964,472	-				-0.0
4,964,472	-				-0.5
4,964,472	-				+2.1
4,964,472	-				-1.5
4,964,472	-				+0.8
4,964,472	-				-0.2
4,964,472	-				-2.6
4,964,472	-				-2.1
4,964,472	-				-0.2
4,964,472	-				-2.3
4,964,472	-				+0.1
4,964,472	-				-0.9
4,964,472	-				-0.7
4,964,472	-				+0.1
4,964,473	+				+1.0
4,964,473	+				-2.0
4,964,473	+				-0.5
4,964,473	+				+3.1
4,964,473	+				-1.0
4,964,473	+				-1.0
4,964,474	-				-0.9
4,964,474	-				+2.3
4,964,474	-				+2.8
4,964,474	-				-1.5
4,964,474	-				-1.4
4,964,474	-				-1.8
4,964,474	-				+0.6
4,964,474	-				-0.7
4,964,475	+				+2.5
4,964,475	+				-1.0
4,964,475	+				-2.0
4,964,475	+				-0.2
4,964,475	+				+1.1
4,964,475	+				-1.2
4,964,475	+				-1.2
4,964,475	+				+0.3
4,964,475	+				-0.9
4,964,475	+				-1.7
4,964,475	+				+2.9
4,964,475	+				-0.9
4,964,475	+				-1.5
4,964,475	+				-0.5
4,964,475	+				+2.3
4,964,475	+				+1.1
4,964,475	+				-1.3
4,964,475	+				+0.5
4,964,475	+				+2.9
4,964,475	+				+0.4
4,964,475	+				-0.2
4,964,475	+				-1.0
4,964,476	-				+2.1
4,964,476	-				+1.1
4,964,476	-				+0.5
4,964,476	-				-1.3
4,964,476	-				+1.5
4,964,476	-				-0.7
4,964,476	-				+0.2
4,964,476	-				-0.9
4,964,476	-				+0.5
4,964,476	-				+2.3
4,964,476	-				+0.7
4,964,476	-				-1.3
4,964,476	-				-0.0
4,964,476	-				-3.2
4,964,476	-				-0.5
4,964,476	-				-0.5
4,964,476	-				-1.8
4,964,476	-				-1.8
4,964,476	-				-1.3
4,964,476	-				+1.7
4,964,491	+				+0.4
4,964,491	+				-2.3
4,964,491	+				-2.1
4,964,491	+				+3.4
4,964,492	-				-0.9
4,964,492	-				-1.3
4,964,492	-				-1.3
4,964,492	-				+2.3
4,964,650	+		PFLU_RS22060	0.15	-0.2
4,964,651	-		PFLU_RS22060	0.15	+2.5
4,964,657	+		PFLU_RS22060	0.16	-1.5
4,964,657	+		PFLU_RS22060	0.16	+1.9
4,964,657	+		PFLU_RS22060	0.16	-0.2
4,964,657	+		PFLU_RS22060	0.16	+0.1
4,964,657	+		PFLU_RS22060	0.16	+0.2
4,964,657	+		PFLU_RS22060	0.16	+2.5
4,964,658	-		PFLU_RS22060	0.16	-3.0
4,964,658	-		PFLU_RS22060	0.16	+2.1
4,964,658	-		PFLU_RS22060	0.16	-0.2
4,964,658	-		PFLU_RS22060	0.16	+0.3
4,964,658	-		PFLU_RS22060	0.16	-3.2
4,964,658	-		PFLU_RS22060	0.16	+2.9
4,964,658	-		PFLU_RS22060	0.16	+1.8
4,964,658	-		PFLU_RS22060	0.16	-1.3
4,964,673	+		PFLU_RS22060	0.18	+0.1
4,964,673	+		PFLU_RS22060	0.18	+0.3
4,964,673	+		PFLU_RS22060	0.18	+0.3
4,964,674	-		PFLU_RS22060	0.18	+0.3
4,964,674	-		PFLU_RS22060	0.18	+0.9
4,964,722	+		PFLU_RS22060	0.22	+0.5
4,964,723	-		PFLU_RS22060	0.22	-1.6
4,964,723	-		PFLU_RS22060	0.22	+2.1
4,964,723	-		PFLU_RS22060	0.22	+0.1
4,964,962	+		PFLU_RS22060	0.45	-1.0
4,965,284	-		PFLU_RS22060	0.76	+2.4
4,965,441	+				+1.1
4,965,442	-				-1.0
4,965,448	+				+1.5