Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19865

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
4,493,577	+				-0.0
4,493,578	-				-1.7
4,493,578	-				+1.1
4,493,578	-				-1.0
4,493,578	-				-1.9
4,493,579	+				+2.7
4,493,579	+				-0.6
4,493,579	+				-2.3
4,493,580	-				+1.0
4,493,618	+				+3.0
4,493,674	+		PFLU_RS30950	0.24	+1.2
4,493,751	+		PFLU_RS30950	0.44	+0.8
4,493,752	-		PFLU_RS30950	0.44	-0.6
4,493,825	+		PFLU_RS30950	0.64	-0.4
4,493,826	-		PFLU_RS30950	0.64	-1.2
4,493,876	+		PFLU_RS30950	0.77	+0.2
4,493,877	-		PFLU_RS30950	0.78	+0.3
4,493,877	-		PFLU_RS30950	0.78	-0.4
4,493,877	-		PFLU_RS30950	0.78	+0.7
4,493,921	+		PFLU_RS30950	0.89	+1.9
4,493,921	+		PFLU_RS30950	0.89	+0.4
4,493,922	-		PFLU_RS30950	0.89	-1.0
4,493,922	-		PFLU_RS30950	0.89	-0.6
4,493,922	-		PFLU_RS30950	0.89	+3.3
4,493,929	+				+1.1
4,493,929	+				-0.5
4,493,929	+				-1.8
4,493,929	+				-1.6
4,493,929	+				-0.2
4,493,929	+				-0.4
4,493,929	+				-1.6
4,493,929	+				+0.4
4,493,929	+				-0.4
4,493,929	+				-0.8
4,493,929	+				-1.2
4,493,929	+				-0.4
4,493,929	+				-0.8
4,493,930	-				-1.0
4,493,930	-				-0.6
4,493,930	-				+1.0
4,493,930	-				+0.4
4,493,930	-				+2.0
4,493,930	-				-0.6
4,493,930	-				-0.6
4,493,930	-				+2.0
4,493,930	-				+1.5
4,493,930	-				+1.8
4,494,147	-		PFLU_RS19860	0.29	-1.8
4,494,469	+				+0.9
4,494,469	+				+0.2
4,494,469	+				+2.8
4,494,470	-				-0.6
4,494,569	+				-1.8
4,494,607	+				+1.2
4,494,688	+		PFLU_RS19865	0.14	-0.2
4,494,781	+		PFLU_RS19865	0.20	-0.4
4,494,782	-		PFLU_RS19865	0.20	-2.2
4,494,928	+		PFLU_RS19865	0.29	-1.1
4,494,928	+		PFLU_RS19865	0.29	+1.0
4,494,928	+		PFLU_RS19865	0.29	-2.0
4,494,928	+		PFLU_RS19865	0.29	-0.6
4,494,929	-		PFLU_RS19865	0.29	-1.2
4,494,929	-		PFLU_RS19865	0.29	+2.0
4,495,081	+		PFLU_RS19865	0.39	+1.4
4,495,082	-		PFLU_RS19865	0.39	-1.5
4,495,126	+		PFLU_RS19865	0.42	+0.2
4,495,126	+		PFLU_RS19865	0.42	+0.7
4,495,127	-		PFLU_RS19865	0.42	-1.4
4,495,207	+		PFLU_RS19865	0.47	-1.4
4,495,432	+		PFLU_RS19865	0.61	+0.6
4,495,432	+		PFLU_RS19865	0.61	-0.2
4,495,432	+		PFLU_RS19865	0.61	-0.4
4,495,432	+		PFLU_RS19865	0.61	-1.9
4,495,432	+		PFLU_RS19865	0.61	-2.3
4,495,432	+		PFLU_RS19865	0.61	+1.4
4,495,432	+		PFLU_RS19865	0.61	+1.4
4,495,433	-		PFLU_RS19865	0.61	-0.8
4,495,433	-		PFLU_RS19865	0.61	+1.9
4,495,433	-		PFLU_RS19865	0.61	-1.5
4,495,433	-		PFLU_RS19865	0.61	+0.4
4,495,433	-		PFLU_RS19865	0.61	-0.0
4,495,433	-		PFLU_RS19865	0.61	-0.6
4,495,654	+		PFLU_RS19865	0.75	-1.6
4,495,655	-		PFLU_RS19865	0.75	-0.7
4,495,655	-		PFLU_RS19865	0.75	+1.3
4,495,708	+		PFLU_RS19865	0.78	+2.3
4,495,708	+		PFLU_RS19865	0.78	-0.8
4,495,708	+		PFLU_RS19865	0.78	-2.3
4,495,708	+		PFLU_RS19865	0.78	+1.3
4,495,708	+		PFLU_RS19865	0.78	-1.8
4,495,754	-		PFLU_RS19865	0.81	-2.1
4,496,300	-		PFLU_RS19870	0.26	+0.4
4,496,305	+		PFLU_RS19870	0.26	-1.4
4,496,305	+		PFLU_RS19870	0.26	-0.6
4,496,305	+		PFLU_RS19870	0.26	+1.4
4,496,306	-		PFLU_RS19870	0.26	-0.0
4,496,383	+		PFLU_RS19870	0.35	+0.6
4,496,475	-		PFLU_RS19870	0.44	-0.2
4,496,539	+		PFLU_RS19870	0.51	-1.4
4,496,539	+		PFLU_RS19870	0.51	+1.0
4,496,539	+		PFLU_RS19870	0.51	+1.0
4,496,564	-		PFLU_RS19870	0.54	-0.0
4,496,630	-		PFLU_RS19870	0.61	+2.6
4,496,630	-		PFLU_RS19870	0.61	-0.0
4,496,630	-		PFLU_RS19870	0.61	-1.5
4,496,630	-		PFLU_RS19870	0.61	-2.4
4,496,966	+				-1.1
4,496,975	+				-0.0
4,496,976	-				-1.0
4,496,976	-				-1.5
4,496,976	-				+0.7
4,496,981	+				-2.1
4,496,981	+				+2.8
4,496,982	-				+4.0
4,496,982	-				-0.6
4,496,982	-				-1.7
4,497,007	+				+2.0
4,497,007	+				-1.6
4,497,007	+				-0.8
4,497,007	+				+0.8