Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18315

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
4,154,141	+		PFLU_RS18310	0.31	-0.7
4,154,188	+		PFLU_RS18310	0.37	+0.3
4,154,188	+		PFLU_RS18310	0.37	+1.3
4,154,188	+		PFLU_RS18310	0.37	-0.5
4,154,188	+		PFLU_RS18310	0.37	-2.9
4,154,188	+		PFLU_RS18310	0.37	-1.5
4,154,188	+		PFLU_RS18310	0.37	-0.9
4,154,189	-		PFLU_RS18310	0.37	+0.9
4,154,189	-		PFLU_RS18310	0.37	+1.3
4,154,189	-		PFLU_RS18310	0.37	-0.1
4,154,189	-		PFLU_RS18310	0.37	+4.0
4,154,189	-		PFLU_RS18310	0.37	+1.1
4,154,189	-		PFLU_RS18310	0.37	+1.9
4,154,189	-		PFLU_RS18310	0.37	+1.4
4,154,189	-		PFLU_RS18310	0.37	-1.0
4,154,189	-		PFLU_RS18310	0.37	-1.5
4,154,189	-		PFLU_RS18310	0.37	-1.3
4,154,189	-		PFLU_RS18310	0.37	+0.7
4,154,239	+		PFLU_RS18310	0.44	-1.6
4,154,239	+		PFLU_RS18310	0.44	-0.1
4,154,239	+		PFLU_RS18310	0.44	+2.4
4,154,239	+		PFLU_RS18310	0.44	-0.0
4,154,239	+		PFLU_RS18310	0.44	-1.7
4,154,239	+		PFLU_RS18310	0.44	-1.1
4,154,239	+		PFLU_RS18310	0.44	-0.5
4,154,239	+		PFLU_RS18310	0.44	-2.5
4,154,239	+		PFLU_RS18310	0.44	+1.9
4,154,240	-		PFLU_RS18310	0.44	+1.2
4,154,240	-		PFLU_RS18310	0.44	-0.9
4,154,240	-		PFLU_RS18310	0.44	-0.5
4,154,240	-		PFLU_RS18310	0.44	+2.1
4,154,240	-		PFLU_RS18310	0.44	+0.6
4,154,240	-		PFLU_RS18310	0.44	-1.6
4,154,243	+		PFLU_RS18310	0.45	+1.0
4,154,243	+		PFLU_RS18310	0.45	-2.5
4,154,243	+		PFLU_RS18310	0.45	+1.6
4,154,244	-		PFLU_RS18310	0.45	-1.6
4,154,244	-		PFLU_RS18310	0.45	-0.9
4,154,244	-		PFLU_RS18310	0.45	-1.7
4,154,244	-		PFLU_RS18310	0.45	+1.9
4,154,287	+		PFLU_RS18310	0.51	-2.1
4,154,288	-		PFLU_RS18310	0.51	-0.9
4,154,288	-		PFLU_RS18310	0.51	-3.0
4,154,288	-		PFLU_RS18310	0.51	-1.9
4,154,288	-		PFLU_RS18310	0.51	-1.3
4,154,307	-		PFLU_RS18310	0.53	-2.8
4,154,425	+		PFLU_RS18310	0.69	+1.4
4,154,426	-		PFLU_RS18310	0.69	+1.9
4,154,426	-		PFLU_RS18310	0.69	-2.3
4,154,432	+		PFLU_RS18310	0.70	+1.7
4,154,432	+		PFLU_RS18310	0.70	+0.3
4,154,432	+		PFLU_RS18310	0.70	+2.4
4,154,433	-		PFLU_RS18310	0.70	+0.3
4,154,433	-		PFLU_RS18310	0.70	+0.8
4,154,433	-		PFLU_RS18310	0.70	-1.7
4,154,433	-		PFLU_RS18310	0.70	-0.9
4,154,446	+		PFLU_RS18310	0.72	-0.1
4,154,447	-		PFLU_RS18310	0.72	-0.5
4,154,447	-		PFLU_RS18310	0.72	+2.9
4,154,447	-		PFLU_RS18310	0.72	+1.9
4,154,589	+				-1.8
4,154,642	+				+1.0
4,154,642	+				-2.0
4,154,642	+				-0.9
4,154,642	+				-2.6
4,154,642	+				-2.3
4,154,642	+				-0.0
4,154,643	-				-2.1
4,154,643	-				+0.9
4,154,643	-				-0.9
4,154,643	-				+0.4
4,154,643	-				-1.1
4,154,714	+				-0.9
4,154,714	+				+2.0
4,154,715	-				+0.5
4,154,715	-				+1.6
4,154,715	-				-1.8
4,154,756	+				-0.5
4,154,756	+				+1.9
4,154,756	+				-1.3
4,154,756	+				+1.9
4,154,756	+				-1.9
4,154,756	+				+0.6
4,154,756	+				+0.3
4,154,757	-				-1.6
4,154,757	-				+1.6
4,154,757	-				+1.4
4,154,757	-				+0.8
4,154,757	-				+1.5
4,154,757	-				+1.2
4,154,757	-				-2.2
4,154,757	-				-0.6
4,154,757	-				+2.7
4,154,757	-				-0.1
4,154,757	-				-2.0
4,154,757	-				+0.8
4,154,757	-				+0.9
4,154,757	-				+1.0
4,154,762	+				-3.0
4,154,762	+				-0.0
4,154,762	+				+3.4
4,154,762	+				+1.9
4,154,763	-				-0.5
4,154,763	-				-1.3
4,154,763	-				-1.7
4,154,763	-				-1.1
4,154,823	+				-0.5
4,154,823	+				+0.9
4,154,823	+				-1.5
4,154,823	+				+1.8
4,154,823	+				-2.0
4,154,823	+				-1.8
4,154,823	+				+1.9
4,154,824	-				+0.3
4,154,824	-				+1.1
4,154,824	-				-0.9
4,154,824	-				+1.6
4,154,825	+				+0.3
4,154,826	-				-2.7
4,154,826	-				+1.4
4,154,826	-				-0.5
4,154,834	+				+0.5
4,154,834	+				-1.8
4,154,834	+				+1.5
4,154,835	-				+0.3
4,154,835	-				-0.5
4,154,835	-				+3.4
4,154,882	+				-0.7
4,154,883	-				-1.7
4,154,883	-				-0.7
4,154,903	+				-1.6
4,154,903	+				-1.9
4,154,903	+				-0.1
4,154,903	+				-0.9
4,154,903	+				+0.3
4,154,903	+				+0.3
4,154,903	+				-2.0
4,154,903	+				+1.5
4,154,903	+				+0.5
4,154,903	+				-0.5
4,154,903	+				-2.7
4,154,903	+				-1.1
4,154,903	+				-2.7
4,154,903	+				-2.3
4,154,903	+				-2.0
4,154,903	+				+0.0
4,154,904	-				-0.6
4,154,904	-				-1.3
4,154,904	-				+0.5
4,154,904	-				-1.3
4,154,904	-				-0.9
4,154,904	-				-2.0
4,154,904	-				+1.9
4,154,904	-				-2.7
4,154,904	-				-0.1
4,154,919	+				+0.5
4,154,920	-				-1.3
4,154,920	-				+2.8
4,154,935	+				-0.8
4,154,935	+				-3.1
4,154,935	+				-2.6
4,154,935	+				-1.8
4,154,935	+				-1.8
4,154,935	+				-1.8
4,154,935	+				-0.9
4,154,936	-				+1.4
4,154,936	-				-1.1
4,154,936	-				+0.5
4,154,936	-				+0.0
4,154,936	-				-0.4
4,154,936	-				-1.8
4,154,936	-				-0.5
4,154,936	-				+0.7
4,154,936	-				+0.3
4,154,936	-				-3.0
4,154,936	-				+2.6
4,154,936	-				-0.7
4,154,936	-				-0.5
4,154,936	-				-0.5
4,154,936	-				+1.5
4,154,936	-				+1.5
4,154,936	-				-0.9
4,154,991	-				-0.5
4,154,991	-				-2.4
4,155,030	+				-0.5
4,155,030	+				-1.3
4,155,030	+				+5.4
4,155,030	+				-0.2
4,155,030	+				+2.1
4,155,030	+				-0.1
4,155,031	-				+1.6
4,155,031	-				+1.0
4,155,031	-				-1.1
4,155,031	-				-0.5
4,155,034	+				-0.4
4,155,034	+				+0.6
4,155,034	+				+0.2
4,155,034	+				+0.2
4,155,034	+				+0.9
4,155,034	+				+2.9
4,155,034	+				-1.6
4,155,035	-				-0.5
4,155,035	-				+0.9
4,155,035	-				-0.9
4,155,035	-				+0.3
4,155,035	-				-0.1
4,155,035	-				+2.0
4,155,037	+				-0.5
4,155,045	+				+0.1
4,155,046	-				-0.5
4,155,078	-				-0.1
4,155,078	-				+0.1
4,155,140	+				-1.6
4,155,140	+				+2.2
4,155,140	+				-1.9
4,155,140	+				-1.1
4,155,140	+				+0.9
4,155,140	+				-0.6
4,155,140	+				-0.9
4,155,140	+				+3.2
4,155,140	+				+0.1
4,155,141	-				-2.9
4,155,253	+		PFLU_RS18315	0.32	-0.6
4,155,306	-		PFLU_RS18315	0.47	+2.4
4,155,317	+		PFLU_RS18315	0.50	-2.3
4,155,366	+		PFLU_RS18315	0.64	+2.7
4,155,366	+		PFLU_RS18315	0.64	+1.3
4,155,366	+		PFLU_RS18315	0.64	-0.5
4,155,415	+		PFLU_RS18315	0.77	-1.9
4,155,428	+		PFLU_RS18315	0.81	+1.9
4,155,428	+		PFLU_RS18315	0.81	-1.1
4,155,428	+		PFLU_RS18315	0.81	+0.9
4,155,428	+		PFLU_RS18315	0.81	+0.7
4,155,428	+		PFLU_RS18315	0.81	-2.5
4,155,428	+		PFLU_RS18315	0.81	-0.5
4,155,428	+		PFLU_RS18315	0.81	-0.1
4,155,429	-		PFLU_RS18315	0.81	-1.5
4,155,429	-		PFLU_RS18315	0.81	+0.1
4,155,429	-		PFLU_RS18315	0.81	-2.4
4,155,429	-		PFLU_RS18315	0.81	+0.3
4,155,429	-		PFLU_RS18315	0.81	-0.9
4,155,463	+				-1.8
4,155,463	+				+1.1
4,155,464	-				+1.9
4,155,464	-				+0.8
4,155,464	-				-0.7
4,155,481	+				-0.7
4,155,482	-				-1.6
4,155,495	+				-2.2
4,155,495	+				-0.6
4,155,495	+				+0.4
4,155,496	-				-0.5
4,155,496	-				-2.3
4,155,496	-				-1.9
4,155,513	-				+2.9
4,155,577	+				+2.4
4,155,577	+				-1.6
4,155,577	+				-1.1
4,155,577	+				-0.1
4,155,578	-				+0.6
4,155,578	-				+1.9
4,155,578	-				-1.2
4,155,664	+				-0.7
4,155,684	+				-3.0
4,155,684	+				-2.1
4,155,684	+				+1.5
4,155,684	+				-2.4
4,155,684	+				+1.4
4,155,684	+				-1.1
4,155,684	+				+0.9
4,155,684	+				+2.5
4,155,684	+				+2.1
4,155,684	+				-1.9
4,155,684	+				+2.1
4,155,685	-				+1.0
4,155,685	-				-0.9
4,155,685	-				-1.9
4,155,685	-				-0.5
4,155,685	-				-0.7
4,155,685	-				+0.9
4,155,685	-				-0.1
4,155,685	-				-2.0
4,155,685	-				-1.3
4,155,685	-				-2.1
4,155,685	-				-1.7
4,155,685	-				-0.5
4,155,685	-				-0.4
4,155,685	-				-0.5
4,155,685	-				+0.1
4,155,685	-				+2.7
4,155,685	-				-1.2
4,155,685	-				+0.3
4,155,685	-				+5.4
4,155,685	-				-0.7
4,155,685	-				+1.2
4,155,685	-				-2.6
4,155,685	-				+0.8
4,155,685	-				-1.8
4,155,685	-				-1.2
4,155,685	-				+0.9
4,155,685	-				+0.4
4,155,758	+				+0.9
4,155,759	-				+1.3
4,155,796	+				-0.7
4,155,796	+				+0.9
4,155,797	-				+1.3
4,155,797	-				+0.2
4,155,805	+				-1.5
4,155,805	+				-0.2
4,155,805	+				-0.9
4,155,805	+				-1.3
4,155,806	-				+2.5
4,155,806	-				-2.5
4,155,806	-				-0.9
4,155,812	-				+3.1
4,155,829	+				-0.4
4,155,829	+				-0.7
4,155,829	+				-0.9
4,155,829	+				+3.1
4,155,829	+				-1.1
4,155,829	+				+2.3
4,155,829	+				+0.7
4,155,829	+				-2.0
4,155,829	+				+1.8
4,155,829	+				-0.8
4,155,829	+				-1.8
4,155,829	+				-1.2
4,155,829	+				+0.3
4,155,830	-				+2.2
4,155,830	-				-1.1
4,155,830	-				+0.9
4,155,830	-				+2.0
4,155,830	-				-1.3
4,155,830	-				+1.4
4,155,830	-				+2.8
4,155,860	+				-1.1
4,155,888	+				+0.3
4,155,889	-				-0.5
4,155,933	+				+2.2
4,155,933	+				+1.0
4,155,933	+				-0.5
4,155,933	+				-0.7
4,155,934	-				-0.7
4,155,934	-				-0.0
4,155,934	-				-1.1
4,155,934	-				-0.1
4,155,934	-				-1.7
4,156,017	+		PFLU_RS18320	0.16	+0.3
4,156,017	+		PFLU_RS18320	0.16	+0.4
4,156,060	-		PFLU_RS18320	0.26	+2.9
4,156,060	-		PFLU_RS18320	0.26	-0.7
4,156,065	-		PFLU_RS18320	0.28	-0.7
4,156,155	+		PFLU_RS18320	0.48	+2.6
4,156,170	+		PFLU_RS18320	0.52	+1.9
4,156,170	+		PFLU_RS18320	0.52	-2.5
4,156,172	+		PFLU_RS18320	0.52	-1.5
4,156,173	-		PFLU_RS18320	0.53	+1.3
4,156,173	-		PFLU_RS18320	0.53	+0.3
4,156,208	+		PFLU_RS18320	0.61	-0.1
4,156,208	+		PFLU_RS18320	0.61	-1.5
4,156,208	+		PFLU_RS18320	0.61	+1.5
4,156,208	+		PFLU_RS18320	0.61	-1.7
4,156,209	-		PFLU_RS18320	0.61	+1.9
4,156,242	+		PFLU_RS18320	0.69	+2.9
4,156,243	-		PFLU_RS18320	0.69	+1.9
4,156,347	+				+2.0
4,156,347	+				-0.1
4,156,347	+				-0.7
4,156,347	+				-0.1
4,156,347	+				+2.0
4,156,347	+				-0.5
4,156,347	+				-2.4
4,156,347	+				+0.4
4,156,347	+				+0.9
4,156,347	+				-0.1
4,156,347	+				+1.4
4,156,348	-				+2.2
4,156,348	-				+0.3
4,156,348	-				-0.9
4,156,348	-				+1.3
4,156,348	-				+0.3
4,156,348	-				+1.8
4,156,348	-				-1.3
4,156,359	+				-2.5
4,156,359	+				-0.5
4,156,359	+				+0.1
4,156,359	+				+1.1
4,156,359	+				-0.7
4,156,359	+				+0.4
4,156,359	+				-3.4
4,156,359	+				-1.8
4,156,359	+				-0.9
4,156,359	+				-0.7
4,156,359	+				+1.1
4,156,359	+				-1.5
4,156,359	+				-2.5
4,156,359	+				-0.0
4,156,359	+				+0.7
4,156,359	+				+0.9
4,156,359	+				+1.7
4,156,359	+				-1.1
4,156,359	+				+0.3
4,156,359	+				+1.9
4,156,359	+				+1.1
4,156,359	+				-2.5
4,156,359	+				-0.0
4,156,360	-				-2.1
4,156,360	-				+0.0
4,156,360	-				-2.1
4,156,360	-				-2.2
4,156,360	-				-1.3
4,156,360	-				+2.2
4,156,360	-				+0.5
4,156,360	-				+2.0
4,156,360	-				+1.7
4,156,360	-				+1.0
4,156,360	-				-1.2
4,156,378	+				-0.9
4,156,378	+				+0.3
4,156,379	-				-1.1
4,156,409	+				-0.9
4,156,445	+				-0.5
4,156,445	+				+1.6
4,156,445	+				+2.2
4,156,446	-				-0.3
4,156,451	+				-0.1
4,156,451	+				-1.5
4,156,451	+				-1.6
4,156,451	+				-0.1
4,156,452	-				+1.0
4,156,452	-				+0.4
4,156,452	-				+0.7