Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16235

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
3,687,254	+		PFLU_RS16225	0.57	-1.5
3,687,255	-		PFLU_RS16225	0.57	-1.5
3,687,263	+		PFLU_RS16225	0.59	+1.0
3,687,279	-		PFLU_RS16225	0.61	-1.0
3,687,293	+		PFLU_RS16225	0.64	+0.6
3,687,293	+		PFLU_RS16225	0.64	-1.0
3,687,293	+		PFLU_RS16225	0.64	-1.5
3,687,294	-		PFLU_RS16225	0.64	+0.1
3,687,294	-		PFLU_RS16225	0.64	-1.7
3,687,366	+		PFLU_RS16225	0.76	-0.1
3,687,366	+		PFLU_RS16225	0.76	-1.0
3,687,478	+				-0.2
3,687,478	+				+1.2
3,687,478	+				-0.8
3,687,478	+				-0.2
3,687,479	-				+3.1
3,687,479	-				-0.2
3,687,479	-				+0.2
3,687,501	+				-0.5
3,687,502	-				+2.0
3,687,507	+				+0.3
3,687,538	+				-3.5
3,687,538	+				-1.8
3,687,538	+				-0.0
3,687,538	+				+0.8
3,687,539	-				+1.4
3,687,539	-				+0.7
3,687,539	-				+1.5
3,687,539	-				-2.3
3,687,552	+				+1.8
3,687,552	+				-0.5
3,687,553	-				+5.6
3,687,560	+				-0.8
3,687,561	-				-1.2
3,687,590	+				-1.7
3,687,591	-				-0.2
3,687,591	-				-1.9
3,687,603	+				-0.8
3,687,604	-				-1.2
3,687,650	+				-1.5
3,687,651	-				+0.2
3,687,669	-				+0.5
3,687,669	-				+0.9
3,687,805	+				+2.4
3,687,806	-				-2.1
3,687,971	+				+0.2
3,687,971	+				+0.2
3,687,971	+				-1.0
3,687,972	-				-2.9
3,687,972	-				-1.8
3,687,972	-				+2.5
3,687,975	+				+0.3
3,687,975	+				-1.0
3,687,975	+				+1.8
3,687,976	-				-1.0
3,687,976	-				-2.0
3,687,976	-				-0.8
3,687,976	-				-1.0
3,687,976	-				+0.7
3,687,976	-				+2.2
3,687,976	-				-0.8
3,688,002	+				+2.2
3,688,002	+				-0.4
3,688,003	-				+1.4
3,688,003	-				-0.8
3,688,003	-				-2.3
3,688,003	-				-1.4
3,688,003	-				+3.8
3,688,015	+				-1.8
3,688,015	+				-0.1
3,688,016	-				-1.7
3,688,016	-				-0.2
3,688,030	+				-1.0
3,688,031	-				+0.7
3,688,031	-				-0.3
3,688,031	-				+2.8
3,688,080	-				+3.1
3,688,080	-				-1.0
3,688,088	+				-0.5
3,688,088	+				-2.1
3,688,088	+				-2.4
3,688,088	+				-0.5
3,688,088	+				+1.1
3,688,089	-				+2.8
3,688,100	+				-1.2
3,688,100	+				-0.1
3,688,101	-				+1.3
3,688,173	+				+0.6
3,688,174	-				+1.8
3,688,186	+				-1.5
3,688,186	+				+1.5
3,688,186	+				+2.3
3,688,186	+				+1.6
3,688,186	+				-1.7
3,688,186	+				-0.8
3,688,186	+				+1.4
3,688,186	+				+0.9
3,688,187	-				-1.2
3,688,187	-				+0.8
3,688,187	-				-1.9
3,688,253	-				+2.9
3,688,253	-				-1.7
3,688,253	-				+2.0
3,688,265	+				-2.0
3,688,333	+		PFLU_RS16235	0.10	-1.4
3,688,333	+		PFLU_RS16235	0.10	-1.4
3,688,334	-		PFLU_RS16235	0.10	-0.4
3,688,334	-		PFLU_RS16235	0.10	-1.2
3,688,539	+		PFLU_RS16235	0.33	-1.8
3,688,539	+		PFLU_RS16235	0.33	+2.6
3,688,539	+		PFLU_RS16235	0.33	-2.1
3,688,540	-		PFLU_RS16235	0.33	+1.8
3,688,540	-		PFLU_RS16235	0.33	+1.3
3,688,540	-		PFLU_RS16235	0.33	-0.5
3,688,540	-		PFLU_RS16235	0.33	+1.8
3,688,540	-		PFLU_RS16235	0.33	-1.2
3,688,663	+		PFLU_RS16235	0.46	+2.7
3,688,663	+		PFLU_RS16235	0.46	-1.7
3,688,685	+		PFLU_RS16235	0.49	-1.2
3,688,685	+		PFLU_RS16235	0.49	-1.5
3,688,685	+		PFLU_RS16235	0.49	-1.0
3,688,685	+		PFLU_RS16235	0.49	+2.6
3,688,685	+		PFLU_RS16235	0.49	-1.4
3,688,685	+		PFLU_RS16235	0.49	-0.2
3,688,685	+		PFLU_RS16235	0.49	+0.2
3,688,685	+		PFLU_RS16235	0.49	-2.6
3,688,685	+		PFLU_RS16235	0.49	-1.4
3,688,685	+		PFLU_RS16235	0.49	-1.4
3,688,685	+		PFLU_RS16235	0.49	-0.1
3,688,685	+		PFLU_RS16235	0.49	-1.8
3,688,686	-		PFLU_RS16235	0.49	-1.4
3,688,686	-		PFLU_RS16235	0.49	+1.9
3,688,686	-		PFLU_RS16235	0.49	+0.2
3,688,686	-		PFLU_RS16235	0.49	+1.8
3,688,686	-		PFLU_RS16235	0.49	-1.8
3,688,689	+		PFLU_RS16235	0.49	+2.2
3,688,690	-		PFLU_RS16235	0.49	+1.0
3,688,729	+		PFLU_RS16235	0.54	-2.1
3,688,910	+		PFLU_RS16235	0.74	-0.2
3,689,156	+				-0.5
3,689,157	-				-0.2
3,689,157	-				-0.2
3,689,203	-				+0.7
3,689,209	-				+1.8
3,689,209	-				+2.8
3,689,209	-				-1.8
3,689,209	-				+2.0
3,689,212	+				+2.3
3,689,212	+				+3.6
3,689,212	+				+1.1
3,689,212	+				-1.5
3,689,212	+				-1.9
3,689,212	+				+3.3
3,689,212	+				+0.8
3,689,212	+				+1.8
3,689,212	+				-1.0
3,689,212	+				-1.2
3,689,212	+				+3.1
3,689,212	+				+4.1
3,689,213	-				+3.7
3,689,213	-				+1.6
3,689,213	-				+1.9
3,689,213	-				-0.2
3,689,215	+				-2.8
3,689,216	-				-1.8
3,689,234	+				+0.5
3,689,234	+				-0.2
3,689,235	-				-0.2
3,689,242	+				+1.7
3,689,242	+				+2.8
3,689,242	+				-1.0
3,689,242	+				-2.0
3,689,242	+				-1.2
3,689,242	+				+0.2
3,689,243	-				-1.0
3,689,243	-				-0.5
3,689,243	-				+3.8
3,689,327	-		PFLU_RS16240	0.13	-0.2
3,689,327	-		PFLU_RS16240	0.13	+1.4
3,689,403	+		PFLU_RS16240	0.22	+0.9
3,689,436	+		PFLU_RS16240	0.26	-0.5
3,689,436	+		PFLU_RS16240	0.26	+1.2
3,689,436	+		PFLU_RS16240	0.26	-2.3
3,689,436	+		PFLU_RS16240	0.26	+0.2
3,689,460	+		PFLU_RS16240	0.29	-1.4
3,689,460	+		PFLU_RS16240	0.29	+1.8
3,689,460	+		PFLU_RS16240	0.29	+2.0
3,689,460	+		PFLU_RS16240	0.29	+0.2
3,689,461	-		PFLU_RS16240	0.29	-1.1
3,689,461	-		PFLU_RS16240	0.29	+0.7
3,689,461	-		PFLU_RS16240	0.29	+2.9
3,689,575	+		PFLU_RS16240	0.43	-0.5
3,689,584	+		PFLU_RS16240	0.44	-0.8
3,689,584	+		PFLU_RS16240	0.44	-2.1
3,689,584	+		PFLU_RS16240	0.44	-0.5
3,689,584	+		PFLU_RS16240	0.44	+1.3
3,689,585	-		PFLU_RS16240	0.44	+0.9
3,689,585	-		PFLU_RS16240	0.44	-2.5
3,689,653	-		PFLU_RS16240	0.52	+0.4
3,689,653	-		PFLU_RS16240	0.52	-1.2
3,689,685	+		PFLU_RS16240	0.56	+0.5
3,689,686	-		PFLU_RS16240	0.56	-0.7
3,689,686	-		PFLU_RS16240	0.56	+0.8
3,689,736	+		PFLU_RS16240	0.62	+2.6
3,689,736	+		PFLU_RS16240	0.62	+1.8
3,689,784	+		PFLU_RS16240	0.68	+2.6
3,689,784	+		PFLU_RS16240	0.68	-1.0
3,689,785	-		PFLU_RS16240	0.68	+0.6
3,689,785	-		PFLU_RS16240	0.68	+3.1
3,689,785	-		PFLU_RS16240	0.68	-1.0
3,689,875	-		PFLU_RS16240	0.79	-2.2
3,689,885	+		PFLU_RS16240	0.80	-0.6
3,689,885	+		PFLU_RS16240	0.80	+0.8
3,689,886	-		PFLU_RS16240	0.80	-1.0
3,689,886	-		PFLU_RS16240	0.80	-1.0
3,689,886	-		PFLU_RS16240	0.80	+0.8
3,689,886	-		PFLU_RS16240	0.80	+2.7
3,689,889	+		PFLU_RS16240	0.80	-0.5
3,689,889	+		PFLU_RS16240	0.80	+0.4
3,689,889	+		PFLU_RS16240	0.80	-2.5
3,689,889	+		PFLU_RS16240	0.80	-0.8
3,689,889	+		PFLU_RS16240	0.80	-2.4
3,689,889	+		PFLU_RS16240	0.80	-0.1
3,689,889	+		PFLU_RS16240	0.80	-2.0
3,689,889	+		PFLU_RS16240	0.80	-0.8
3,689,889	+		PFLU_RS16240	0.80	-0.8
3,689,889	+		PFLU_RS16240	0.80	-1.4
3,689,889	+		PFLU_RS16240	0.80	+0.2
3,689,889	+		PFLU_RS16240	0.80	+0.9
3,689,889	+		PFLU_RS16240	0.80	-1.4
3,689,889	+		PFLU_RS16240	0.80	+2.1
3,689,889	+		PFLU_RS16240	0.80	+2.8
3,689,889	+		PFLU_RS16240	0.80	+3.1
3,689,890	-		PFLU_RS16240	0.81	+0.0
3,689,890	-		PFLU_RS16240	0.81	-2.8
3,689,890	-		PFLU_RS16240	0.81	+1.8
3,689,890	-		PFLU_RS16240	0.81	-0.3
3,689,890	-		PFLU_RS16240	0.81	-0.5
3,689,890	-		PFLU_RS16240	0.81	-1.5
3,689,890	-		PFLU_RS16240	0.81	+3.0
3,689,890	-		PFLU_RS16240	0.81	+1.7
3,689,890	-		PFLU_RS16240	0.81	+1.3
3,689,890	-		PFLU_RS16240	0.81	-2.0
3,689,890	-		PFLU_RS16240	0.81	+0.1
3,689,890	-		PFLU_RS16240	0.81	-1.2
3,689,890	-		PFLU_RS16240	0.81	-1.6
3,689,890	-		PFLU_RS16240	0.81	-1.5
3,689,944	+		PFLU_RS16240	0.87	-1.5
3,689,944	+		PFLU_RS16240	0.87	+0.2
3,689,944	+		PFLU_RS16240	0.87	+1.8
3,689,944	+		PFLU_RS16240	0.87	-2.1
3,689,944	+		PFLU_RS16240	0.87	+0.2
3,689,945	-		PFLU_RS16240	0.87	+0.6
3,689,945	-		PFLU_RS16240	0.87	-1.8
3,689,945	-		PFLU_RS16240	0.87	-0.5
3,689,945	-		PFLU_RS16240	0.87	+2.4
3,689,970	+				-2.9
3,689,970	+				-0.8
3,689,970	+				+0.1
3,689,970	+				-0.5
3,689,970	+				-0.5
3,689,970	+				-1.2
3,689,970	+				-1.5
3,689,970	+				+0.2
3,689,970	+				-0.2
3,689,971	-				+1.2
3,689,971	-				+0.4
3,689,971	-				+0.2
3,690,065	+				-1.7
3,690,065	+				-1.2
3,690,065	+				+0.9
3,690,065	+				-2.8
3,690,066	-				+0.6
3,690,066	-				+0.9
3,690,085	+				-0.8
3,690,085	+				+1.9
3,690,086	-				-3.2