Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13145

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
2,970,698	+		PFLU_RS13140	0.38	-1.3
2,970,698	+		PFLU_RS13140	0.38	+1.7
2,970,699	-		PFLU_RS13140	0.38	-1.1
2,970,699	-		PFLU_RS13140	0.38	+0.2
2,970,714	-		PFLU_RS13140	0.39	+1.3
2,970,714	-		PFLU_RS13140	0.39	+1.7
2,970,794	+		PFLU_RS13140	0.44	+0.2
2,970,794	+		PFLU_RS13140	0.44	-1.3
2,970,794	+		PFLU_RS13140	0.44	+1.4
2,970,794	+		PFLU_RS13140	0.44	-0.3
2,970,794	+		PFLU_RS13140	0.44	+1.7
2,970,794	+		PFLU_RS13140	0.44	+1.7
2,970,794	+		PFLU_RS13140	0.44	+1.2
2,970,794	+		PFLU_RS13140	0.44	+1.3
2,970,794	+		PFLU_RS13140	0.44	-2.3
2,970,794	+		PFLU_RS13140	0.44	-1.6
2,970,795	-		PFLU_RS13140	0.44	-0.1
2,970,795	-		PFLU_RS13140	0.44	+1.2
2,970,795	-		PFLU_RS13140	0.44	-0.3
2,970,795	-		PFLU_RS13140	0.44	-2.0
2,970,795	-		PFLU_RS13140	0.44	-0.6
2,970,795	-		PFLU_RS13140	0.44	-0.8
2,970,795	-		PFLU_RS13140	0.44	-0.3
2,970,795	-		PFLU_RS13140	0.44	-2.2
2,970,837	+		PFLU_RS13140	0.47	-0.3
2,970,993	+		PFLU_RS13140	0.57	-0.3
2,971,043	+		PFLU_RS13140	0.60	+0.9
2,971,044	-		PFLU_RS13140	0.60	+3.2
2,971,066	+		PFLU_RS13140	0.62	+0.7
2,971,181	+		PFLU_RS13140	0.69	-1.3
2,971,181	+		PFLU_RS13140	0.69	-0.3
2,971,181	+		PFLU_RS13140	0.69	-0.8
2,971,181	+		PFLU_RS13140	0.69	+0.4
2,971,182	-		PFLU_RS13140	0.69	+0.0
2,971,182	-		PFLU_RS13140	0.69	+2.2
2,971,182	-		PFLU_RS13140	0.69	-0.6
2,971,250	+		PFLU_RS13140	0.74	+1.4
2,971,251	-		PFLU_RS13140	0.74	+2.4
2,971,295	+		PFLU_RS13140	0.77	-1.3
2,971,295	+		PFLU_RS13140	0.77	+0.2
2,971,295	+		PFLU_RS13140	0.77	+1.3
2,971,295	+		PFLU_RS13140	0.77	-0.4
2,971,295	+		PFLU_RS13140	0.77	+1.6
2,971,295	+		PFLU_RS13140	0.77	+2.7
2,971,295	+		PFLU_RS13140	0.77	+0.2
2,971,295	+		PFLU_RS13140	0.77	+2.7
2,971,296	-		PFLU_RS13140	0.77	-1.1
2,971,296	-		PFLU_RS13140	0.77	-0.1
2,971,296	-		PFLU_RS13140	0.77	+1.3
2,971,296	-		PFLU_RS13140	0.77	+2.9
2,971,296	-		PFLU_RS13140	0.77	+1.0
2,971,382	-		PFLU_RS13140	0.82	+0.7
2,971,382	-		PFLU_RS13140	0.82	-1.4
2,971,400	+		PFLU_RS13140	0.84	+3.0
2,971,400	+		PFLU_RS13140	0.84	-2.2
2,971,400	+		PFLU_RS13140	0.84	+0.7
2,971,400	+		PFLU_RS13140	0.84	-2.2
2,971,400	+		PFLU_RS13140	0.84	-1.7
2,971,400	+		PFLU_RS13140	0.84	+1.2
2,971,401	-		PFLU_RS13140	0.84	+0.7
2,971,401	-		PFLU_RS13140	0.84	+1.9
2,971,402	+		PFLU_RS13140	0.84	-1.7
2,971,402	+		PFLU_RS13140	0.84	+1.1
2,971,403	-		PFLU_RS13140	0.84	-1.8
2,971,403	-		PFLU_RS13140	0.84	-0.6
2,971,430	-		PFLU_RS13140	0.86	+0.4
2,971,436	+		PFLU_RS13140	0.86	+0.6
2,971,451	+		PFLU_RS13140	0.87	-0.2
2,971,451	+		PFLU_RS13140	0.87	-1.1
2,971,451	+		PFLU_RS13140	0.87	-1.6
2,971,451	+		PFLU_RS13140	0.87	+1.9
2,971,451	+		PFLU_RS13140	0.87	-2.2
2,971,451	+		PFLU_RS13140	0.87	-0.6
2,971,452	-		PFLU_RS13140	0.87	-2.2
2,971,452	-		PFLU_RS13140	0.87	+0.2
2,971,452	-		PFLU_RS13140	0.87	+2.2
2,971,452	-		PFLU_RS13140	0.87	-1.3
2,971,452	-		PFLU_RS13140	0.87	+2.9
2,971,568	+				+1.0
2,971,568	+				+0.2
2,971,569	-				-3.0
2,971,569	-				+0.8
2,971,677	+				-2.3
2,971,719	+				-0.0
2,971,719	+				+0.6
2,971,720	-				+0.9
2,971,869	+		PFLU_RS13145	0.27	-0.1
2,972,086	+		PFLU_RS13145	0.53	-1.7
2,972,086	+		PFLU_RS13145	0.53	+0.0
2,972,135	+		PFLU_RS13145	0.59	-0.8
2,972,135	+		PFLU_RS13145	0.59	-2.2
2,972,135	+		PFLU_RS13145	0.59	-2.3
2,972,135	+		PFLU_RS13145	0.59	-2.4
2,972,135	+		PFLU_RS13145	0.59	-1.3
2,972,136	-		PFLU_RS13145	0.60	+0.3
2,972,136	-		PFLU_RS13145	0.60	-0.6
2,972,141	+		PFLU_RS13145	0.60	-2.3
2,972,209	+		PFLU_RS13145	0.68	+0.7
2,972,209	+		PFLU_RS13145	0.68	+0.6
2,972,209	+		PFLU_RS13145	0.68	+1.3
2,972,209	+		PFLU_RS13145	0.68	+0.0
2,972,209	+		PFLU_RS13145	0.68	+1.7
2,972,210	-		PFLU_RS13145	0.68	+0.3
2,972,210	-		PFLU_RS13145	0.68	+0.2
2,972,210	-		PFLU_RS13145	0.68	-2.1
2,972,210	-		PFLU_RS13145	0.68	-0.6
2,972,210	-		PFLU_RS13145	0.68	+1.2
2,972,452	-				-1.8
2,972,452	-				+0.3
2,972,467	+				+0.1
2,972,483	+				-0.3
2,972,483	+				-0.6
2,972,483	+				-1.3
2,972,524	+				-0.6
2,972,524	+				+0.6
2,972,524	+				+0.9
2,972,538	-				+1.7
2,972,538	-				-3.4
2,972,538	-				-1.6
2,972,538	-				-1.1
2,972,538	-				-0.6
2,972,538	-				-3.1
2,972,633	+		PFLU_RS13150	0.37	+3.6
2,972,633	+		PFLU_RS13150	0.37	-1.1
2,972,633	+		PFLU_RS13150	0.37	+0.3
2,972,633	+		PFLU_RS13150	0.37	-2.4
2,972,633	+		PFLU_RS13150	0.37	-2.2
2,972,634	-		PFLU_RS13150	0.38	-2.5
2,972,677	-		PFLU_RS13150	0.54	-2.3
2,972,677	-		PFLU_RS13150	0.54	+0.9
2,972,860	+				+2.5
2,972,860	+				+0.1
2,972,861	-				+1.5
2,972,861	-				+1.4
2,972,861	-				-1.7
2,972,866	+				-0.2
2,972,866	+				+0.2
2,972,866	+				+3.3
2,972,866	+				-2.2
2,972,866	+				+2.2
2,972,866	+				-3.2
2,972,867	-				+2.0
2,972,867	-				+1.0
2,972,867	-				-2.1
2,972,867	-				-2.6
2,972,867	-				+3.1
2,972,901	+				+1.2
2,972,901	+				-2.6
2,972,902	-				-1.4
2,972,910	+				-1.8
2,972,910	+				-1.3
2,972,910	+				-1.6
2,972,911	-				-1.1
2,972,911	-				-0.8
2,972,923	+				-1.1
2,972,923	+				+1.0
2,972,924	-				+2.0
2,972,924	-				+0.9
2,972,940	+				-1.4
2,972,940	+				+2.9
2,972,941	-				-1.8
2,972,941	-				+0.2
2,972,941	-				-1.1
2,972,941	-				-3.2
2,972,941	-				-2.5
2,972,941	-				+2.1
2,972,941	-				+0.5
2,972,941	-				-0.4
2,973,029	+				-1.3
2,973,029	+				-1.3
2,973,029	+				-0.8
2,973,029	+				+0.2
2,973,029	+				+0.3
2,973,029	+				-1.8
2,973,029	+				-0.3
2,973,030	-				+3.2
2,973,067	+				-2.1
2,973,068	-				-1.8
2,973,170	+				+2.4
2,973,170	+				+1.7
2,973,171	-				-0.3
2,973,246	+				+2.9
2,973,246	+				+1.2
2,973,246	+				-1.3
2,973,246	+				-2.2
2,973,246	+				-1.1
2,973,246	+				+0.8
2,973,246	+				+2.3
2,973,246	+				+1.8
2,973,246	+				-1.4
2,973,246	+				+0.6
2,973,246	+				+1.4
2,973,246	+				+0.7
2,973,246	+				+2.9
2,973,247	-				+0.7
2,973,247	-				+0.2
2,973,247	-				-0.8
2,973,247	-				-0.4
2,973,247	-				-0.3
2,973,247	-				+0.7
2,973,247	-				-1.1
2,973,247	-				+2.4
2,973,247	-				-0.3
2,973,247	-				+0.5
2,973,247	-				-1.1
2,973,304	+		PFLU_RS13155	0.12	-0.7
2,973,371	+		PFLU_RS13155	0.17	-1.4
2,973,371	+		PFLU_RS13155	0.17	+0.2
2,973,441	+		PFLU_RS13155	0.23	+3.6
2,973,441	+		PFLU_RS13155	0.23	-1.4
2,973,442	-		PFLU_RS13155	0.23	+3.6
2,973,442	-		PFLU_RS13155	0.23	+1.9
2,973,442	-		PFLU_RS13155	0.23	-0.3
2,973,442	-		PFLU_RS13155	0.23	-1.7
2,973,442	-		PFLU_RS13155	0.23	+0.4
2,973,442	-		PFLU_RS13155	0.23	+0.2
2,973,442	-		PFLU_RS13155	0.23	+1.7
2,973,442	-		PFLU_RS13155	0.23	+0.2
2,973,442	-		PFLU_RS13155	0.23	-0.3
2,973,467	+		PFLU_RS13155	0.25	-0.8
2,973,467	+		PFLU_RS13155	0.25	-2.8
2,973,468	-		PFLU_RS13155	0.25	-1.8
2,973,468	-		PFLU_RS13155	0.25	-0.3