Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08360

Experiment: caffeic 2 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	caffeic 2 mM (C)
1,869,597	+		PFLU_RS08350	0.84	-0.3
1,869,597	+		PFLU_RS08350	0.84	-0.8
1,869,597	+		PFLU_RS08350	0.84	-0.3
1,869,636	+		PFLU_RS08350	0.90	+0.4
1,869,636	+		PFLU_RS08350	0.90	-0.8
1,869,637	-				-0.3
1,869,672	+				-1.5
1,869,672	+				-2.4
1,869,673	-				-0.6
1,869,673	-				-1.1
1,869,781	+		PFLU_RS08355	0.11	+1.4
1,869,802	+		PFLU_RS08355	0.14	+1.0
1,869,803	-		PFLU_RS08355	0.14	-0.2
1,869,805	+		PFLU_RS08355	0.15	+0.8
1,869,805	+		PFLU_RS08355	0.15	+3.0
1,869,805	+		PFLU_RS08355	0.15	+1.0
1,869,805	+		PFLU_RS08355	0.15	+2.2
1,869,805	+		PFLU_RS08355	0.15	-2.0
1,869,805	+		PFLU_RS08355	0.15	+4.0
1,869,805	+		PFLU_RS08355	0.15	+0.4
1,869,805	+		PFLU_RS08355	0.15	-2.0
1,869,805	+		PFLU_RS08355	0.15	+2.7
1,869,805	+		PFLU_RS08355	0.15	+2.5
1,869,805	+		PFLU_RS08355	0.15	-1.6
1,869,805	+		PFLU_RS08355	0.15	-1.0
1,869,805	+		PFLU_RS08355	0.15	-1.0
1,869,805	+		PFLU_RS08355	0.15	+0.3
1,869,806	-		PFLU_RS08355	0.15	-2.0
1,869,806	-		PFLU_RS08355	0.15	+1.0
1,869,806	-		PFLU_RS08355	0.15	-1.5
1,869,806	-		PFLU_RS08355	0.15	+0.7
1,869,806	-		PFLU_RS08355	0.15	-2.0
1,869,806	-		PFLU_RS08355	0.15	-1.2
1,869,806	-		PFLU_RS08355	0.15	+1.9
1,869,806	-		PFLU_RS08355	0.15	-1.7
1,869,806	-		PFLU_RS08355	0.15	-0.6
1,869,890	-		PFLU_RS08355	0.29	+0.3
1,869,890	-		PFLU_RS08355	0.29	+0.7
1,869,967	+		PFLU_RS08355	0.41	-1.0
1,869,967	+		PFLU_RS08355	0.41	-2.3
1,869,967	+		PFLU_RS08355	0.41	+0.2
1,869,967	+		PFLU_RS08355	0.41	+2.0
1,869,967	+		PFLU_RS08355	0.41	-1.6
1,869,967	+		PFLU_RS08355	0.41	-0.6
1,869,967	+		PFLU_RS08355	0.41	-0.6
1,869,967	+		PFLU_RS08355	0.41	-1.3
1,869,967	+		PFLU_RS08355	0.41	+1.7
1,869,967	+		PFLU_RS08355	0.41	-1.9
1,869,968	-		PFLU_RS08355	0.42	-1.6
1,869,968	-		PFLU_RS08355	0.42	+1.1
1,869,968	-		PFLU_RS08355	0.42	+2.1
1,869,968	-		PFLU_RS08355	0.42	+2.2
1,869,968	-		PFLU_RS08355	0.42	-0.8
1,869,968	-		PFLU_RS08355	0.42	-1.3
1,869,968	-		PFLU_RS08355	0.42	+2.3
1,869,968	-		PFLU_RS08355	0.42	-1.3
1,869,968	-		PFLU_RS08355	0.42	-0.0
1,869,968	-		PFLU_RS08355	0.42	-0.3
1,869,968	-		PFLU_RS08355	0.42	-0.5
1,869,968	-		PFLU_RS08355	0.42	-0.6
1,869,968	-		PFLU_RS08355	0.42	-0.1
1,869,968	-		PFLU_RS08355	0.42	+1.4
1,869,968	-		PFLU_RS08355	0.42	+1.4
1,870,121	+		PFLU_RS08355	0.67	-2.2
1,870,121	+		PFLU_RS08355	0.67	-1.7
1,870,121	+		PFLU_RS08355	0.67	+1.0
1,870,121	+		PFLU_RS08355	0.67	+0.8
1,870,121	+		PFLU_RS08355	0.67	+2.7
1,870,121	+		PFLU_RS08355	0.67	+0.8
1,870,121	+		PFLU_RS08355	0.67	+1.0
1,870,121	+		PFLU_RS08355	0.67	-2.3
1,870,121	+		PFLU_RS08355	0.67	-0.3
1,870,121	+		PFLU_RS08355	0.67	-1.2
1,870,121	+		PFLU_RS08355	0.67	+0.8
1,870,121	+		PFLU_RS08355	0.67	-2.5
1,870,121	+		PFLU_RS08355	0.67	-2.7
1,870,121	+		PFLU_RS08355	0.67	+2.9
1,870,121	+		PFLU_RS08355	0.67	-0.6
1,870,122	-		PFLU_RS08355	0.67	+2.8
1,870,122	-		PFLU_RS08355	0.67	-1.2
1,870,122	-		PFLU_RS08355	0.67	+0.4
1,870,122	-		PFLU_RS08355	0.67	-0.1
1,870,122	-		PFLU_RS08355	0.67	-2.1
1,870,122	-		PFLU_RS08355	0.67	+0.3
1,870,122	-		PFLU_RS08355	0.67	-1.5
1,870,122	-		PFLU_RS08355	0.67	-0.0
1,870,122	-		PFLU_RS08355	0.67	+0.1
1,870,122	-		PFLU_RS08355	0.67	-2.3
1,870,122	-		PFLU_RS08355	0.67	-0.6
1,870,133	+		PFLU_RS08355	0.69	+2.1
1,870,133	+		PFLU_RS08355	0.69	+2.3
1,870,133	+		PFLU_RS08355	0.69	+0.4
1,870,134	-		PFLU_RS08355	0.69	-0.3
1,870,157	+		PFLU_RS08355	0.73	+0.4
1,870,157	+		PFLU_RS08355	0.73	-1.3
1,870,157	+		PFLU_RS08355	0.73	+0.4
1,870,157	+		PFLU_RS08355	0.73	-0.0
1,870,157	+		PFLU_RS08355	0.73	+1.3
1,870,157	+		PFLU_RS08355	0.73	+0.3
1,870,157	+		PFLU_RS08355	0.73	+0.7
1,870,158	-		PFLU_RS08355	0.73	-1.5
1,870,158	-		PFLU_RS08355	0.73	+1.3
1,870,158	-		PFLU_RS08355	0.73	+0.5
1,870,158	-		PFLU_RS08355	0.73	+0.4
1,870,158	-		PFLU_RS08355	0.73	-1.1
1,870,158	-		PFLU_RS08355	0.73	+0.3
1,870,158	-		PFLU_RS08355	0.73	+0.8
1,870,158	-		PFLU_RS08355	0.73	+1.0
1,870,158	-		PFLU_RS08355	0.73	-0.7
1,870,158	-		PFLU_RS08355	0.73	-0.0
1,870,158	-		PFLU_RS08355	0.73	-0.3
1,870,158	-		PFLU_RS08355	0.73	-2.3
1,870,158	-		PFLU_RS08355	0.73	-0.5
1,870,158	-		PFLU_RS08355	0.73	+0.9
1,870,158	-		PFLU_RS08355	0.73	-1.5
1,870,158	-		PFLU_RS08355	0.73	-1.7
1,870,305	+				+0.0
1,870,305	+				+1.2
1,870,306	-				+2.3
1,870,306	-				-0.3
1,870,317	+				+3.8
1,870,317	+				-1.9
1,870,317	+				-0.8
1,870,317	+				-1.8
1,870,317	+				+0.3
1,870,317	+				+1.0
1,870,317	+				+2.7
1,870,318	-				+1.8
1,870,318	-				-1.0
1,870,318	-				+1.4
1,870,318	-				+1.5
1,870,318	-				-1.3
1,870,348	+				-1.8
1,870,348	+				+1.0
1,870,349	-				-1.0
1,870,406	+				+1.6
1,870,406	+				-0.0
1,870,406	+				-0.0
1,870,406	+				-2.3
1,870,406	+				+0.6
1,870,406	+				-1.2
1,870,406	+				+1.2
1,870,406	+				+2.1
1,870,406	+				+2.0
1,870,407	-				+0.4
1,870,407	-				+2.1
1,870,407	-				-2.2
1,870,407	-				-0.0
1,870,407	-				-1.2
1,870,407	-				+1.7
1,870,407	-				+0.4
1,870,407	-				+0.6
1,870,410	+		PFLU_RS08360	0.10	-0.3
1,870,410	+		PFLU_RS08360	0.10	+1.6
1,870,410	+		PFLU_RS08360	0.10	+0.8
1,870,410	+		PFLU_RS08360	0.10	-0.5
1,870,410	+		PFLU_RS08360	0.10	+1.0
1,870,410	+		PFLU_RS08360	0.10	-0.2
1,870,410	+		PFLU_RS08360	0.10	-2.3
1,870,410	+		PFLU_RS08360	0.10	-1.5
1,870,411	-		PFLU_RS08360	0.11	-2.3
1,870,411	-		PFLU_RS08360	0.11	+1.0
1,870,411	-		PFLU_RS08360	0.11	+2.0
1,870,411	-		PFLU_RS08360	0.11	+0.4
1,870,411	-		PFLU_RS08360	0.11	-0.3
1,870,411	-		PFLU_RS08360	0.11	+1.7
1,870,411	-		PFLU_RS08360	0.11	-0.0
1,870,411	-		PFLU_RS08360	0.11	+1.0
1,870,411	-		PFLU_RS08360	0.11	+2.9
1,870,411	-		PFLU_RS08360	0.11	-1.3
1,870,411	-		PFLU_RS08360	0.11	-1.3
1,870,531	+		PFLU_RS08360	0.51	+1.6
1,870,532	-		PFLU_RS08360	0.52	-0.0
1,870,671	+				-0.3
1,870,671	+				-0.3
1,870,671	+				-1.5
1,870,671	+				+2.3
1,870,671	+				+2.2
1,870,671	+				-1.7
1,870,672	-				+3.9
1,870,672	-				-1.5
1,870,682	+				-1.0
1,870,682	+				-1.6
1,870,682	+				+4.8
1,870,682	+				-2.2
1,870,683	-				-0.9
1,870,683	-				-0.8
1,870,683	-				+0.7
1,870,683	-				-2.2
1,870,683	-				-0.9
1,870,683	-				+2.0
1,870,683	-				-1.3
1,870,699	+				+0.4
1,870,699	+				+0.6
1,870,699	+				-0.8
1,870,699	+				-0.8
1,870,699	+				-1.0
1,870,699	+				+0.4
1,870,699	+				-1.6
1,870,699	+				+3.1
1,870,699	+				-0.6
1,870,699	+				+1.3
1,870,699	+				-2.7
1,870,699	+				-1.5
1,870,700	-				+1.0
1,870,700	-				+2.3
1,870,700	-				-2.0
1,870,700	-				-1.2
1,870,700	-				-0.4
1,870,701	+				+0.1
1,870,701	+				-2.3
1,870,701	+				+1.0
1,870,701	+				+0.6
1,870,701	+				-2.1
1,870,701	+				+0.8
1,870,701	+				+3.0
1,870,702	-				+1.6
1,870,702	-				-0.3
1,870,702	-				+0.9
1,870,702	-				+0.0
1,870,702	-				+0.8
1,870,702	-				-2.5
1,870,702	-				-1.6
1,870,702	-				-1.9
1,870,714	+				+0.7
1,870,714	+				+0.9
1,870,714	+				+3.5
1,870,714	+				-0.0
1,870,714	+				+3.0
1,870,714	+				+0.3
1,870,714	+				-1.5
1,870,714	+				-0.3
1,870,714	+				+0.5
1,870,714	+				+0.8
1,870,714	+				-1.7
1,870,715	-				-0.8
1,870,715	-				+1.1
1,870,715	-				+2.5
1,870,715	-				+0.6
1,870,715	-				-1.8
1,870,718	+				-0.2
1,870,718	+				+0.7
1,870,718	+				-2.3
1,870,718	+				-0.0
1,870,888	+		PFLU_RS08365	0.15	+2.3
1,870,888	+		PFLU_RS08365	0.15	+3.3
1,870,888	+		PFLU_RS08365	0.15	+1.0
1,870,889	-		PFLU_RS08365	0.15	+2.1
1,870,889	-		PFLU_RS08365	0.15	+4.0
1,870,889	-		PFLU_RS08365	0.15	-0.8
1,870,889	-		PFLU_RS08365	0.15	+1.5
1,870,889	-		PFLU_RS08365	0.15	+1.7
1,870,889	-		PFLU_RS08365	0.15	-0.6
1,870,921	+		PFLU_RS08365	0.18	-2.0
1,870,921	+		PFLU_RS08365	0.18	+3.3
1,870,921	+		PFLU_RS08365	0.18	-0.5
1,870,921	+		PFLU_RS08365	0.18	+0.8
1,870,921	+		PFLU_RS08365	0.18	-0.2
1,870,921	+		PFLU_RS08365	0.18	-0.2
1,870,921	+		PFLU_RS08365	0.18	+0.4
1,870,921	+		PFLU_RS08365	0.18	+0.8
1,870,921	+		PFLU_RS08365	0.18	-0.3
1,870,921	+		PFLU_RS08365	0.18	+3.7
1,870,921	+		PFLU_RS08365	0.18	-1.5
1,870,921	+		PFLU_RS08365	0.18	+2.6
1,870,921	+		PFLU_RS08365	0.18	-2.5
1,870,921	+		PFLU_RS08365	0.18	+1.8
1,870,921	+		PFLU_RS08365	0.18	+2.2
1,870,921	+		PFLU_RS08365	0.18	+2.6
1,870,921	+		PFLU_RS08365	0.18	+0.9
1,870,921	+		PFLU_RS08365	0.18	-0.5
1,870,921	+		PFLU_RS08365	0.18	-1.6
1,870,922	-		PFLU_RS08365	0.18	+1.1
1,870,922	-		PFLU_RS08365	0.18	+3.0
1,870,922	-		PFLU_RS08365	0.18	-0.8
1,870,922	-		PFLU_RS08365	0.18	-1.5
1,870,922	-		PFLU_RS08365	0.18	-1.2
1,870,922	-		PFLU_RS08365	0.18	-1.7
1,870,922	-		PFLU_RS08365	0.18	+4.1
1,870,922	-		PFLU_RS08365	0.18	-2.5
1,870,922	-		PFLU_RS08365	0.18	-0.0
1,870,922	-		PFLU_RS08365	0.18	+4.0
1,870,922	-		PFLU_RS08365	0.18	+1.4
1,870,922	-		PFLU_RS08365	0.18	-1.0
1,870,922	-		PFLU_RS08365	0.18	-0.0
1,870,922	-		PFLU_RS08365	0.18	-1.7
1,870,922	-		PFLU_RS08365	0.18	-1.2
1,870,922	-		PFLU_RS08365	0.18	-0.8
1,870,922	-		PFLU_RS08365	0.18	-1.8
1,870,922	-		PFLU_RS08365	0.18	-0.3
1,870,922	-		PFLU_RS08365	0.18	+1.6
1,870,922	-		PFLU_RS08365	0.18	-2.7
1,870,922	-		PFLU_RS08365	0.18	-2.5
1,870,922	-		PFLU_RS08365	0.18	-1.0
1,870,922	-		PFLU_RS08365	0.18	-1.1
1,870,922	-		PFLU_RS08365	0.18	-1.0
1,870,922	-		PFLU_RS08365	0.18	-0.0
1,870,922	-		PFLU_RS08365	0.18	+0.4
1,870,922	-		PFLU_RS08365	0.18	+1.4
1,870,922	-		PFLU_RS08365	0.18	-2.9
1,870,933	+		PFLU_RS08365	0.19	+1.7
1,870,933	+		PFLU_RS08365	0.19	+0.2
1,871,074	+		PFLU_RS08365	0.34	+2.5
1,871,074	+		PFLU_RS08365	0.34	+0.1
1,871,074	+		PFLU_RS08365	0.34	-1.7
1,871,074	+		PFLU_RS08365	0.34	+1.2
1,871,075	-		PFLU_RS08365	0.34	-1.2
1,871,075	-		PFLU_RS08365	0.34	-0.0
1,871,077	+		PFLU_RS08365	0.34	+1.5
1,871,077	+		PFLU_RS08365	0.34	-1.6
1,871,077	+		PFLU_RS08365	0.34	-1.0
1,871,077	+		PFLU_RS08365	0.34	-1.2
1,871,077	+		PFLU_RS08365	0.34	-1.2
1,871,077	+		PFLU_RS08365	0.34	+1.3
1,871,077	+		PFLU_RS08365	0.34	-1.0
1,871,077	+		PFLU_RS08365	0.34	+1.4
1,871,077	+		PFLU_RS08365	0.34	-0.8
1,871,077	+		PFLU_RS08365	0.34	-2.1
1,871,078	-		PFLU_RS08365	0.34	+0.0
1,871,078	-		PFLU_RS08365	0.34	-0.8
1,871,078	-		PFLU_RS08365	0.34	+2.7
1,871,078	-		PFLU_RS08365	0.34	+3.9
1,871,078	-		PFLU_RS08365	0.34	-2.3
1,871,078	-		PFLU_RS08365	0.34	-0.6
1,871,104	+		PFLU_RS08365	0.37	-0.0
1,871,104	+		PFLU_RS08365	0.37	+4.0
1,871,104	+		PFLU_RS08365	0.37	+0.8
1,871,104	+		PFLU_RS08365	0.37	+0.2
1,871,104	+		PFLU_RS08365	0.37	-2.3
1,871,104	+		PFLU_RS08365	0.37	+2.4
1,871,104	+		PFLU_RS08365	0.37	+0.8
1,871,104	+		PFLU_RS08365	0.37	-0.3
1,871,105	-		PFLU_RS08365	0.37	-0.8
1,871,105	-		PFLU_RS08365	0.37	+1.0
1,871,105	-		PFLU_RS08365	0.37	+0.4
1,871,105	-		PFLU_RS08365	0.37	+1.8
1,871,105	-		PFLU_RS08365	0.37	+0.5
1,871,105	-		PFLU_RS08365	0.37	-0.1
1,871,314	+		PFLU_RS08365	0.59	+2.1
1,871,315	-		PFLU_RS08365	0.59	-0.3
1,871,358	+		PFLU_RS08365	0.63	-3.5
1,871,358	+		PFLU_RS08365	0.63	+0.5
1,871,358	+		PFLU_RS08365	0.63	+2.0
1,871,358	+		PFLU_RS08365	0.63	+1.3
1,871,358	+		PFLU_RS08365	0.63	+1.6
1,871,358	+		PFLU_RS08365	0.63	-0.0
1,871,358	+		PFLU_RS08365	0.63	+1.0
1,871,359	-		PFLU_RS08365	0.63	-1.1
1,871,359	-		PFLU_RS08365	0.63	+1.3
1,871,359	-		PFLU_RS08365	0.63	-0.8
1,871,359	-		PFLU_RS08365	0.63	+2.4
1,871,359	-		PFLU_RS08365	0.63	+2.8
1,871,359	-		PFLU_RS08365	0.63	-2.3
1,871,379	+		PFLU_RS08365	0.65	+2.0
1,871,379	+		PFLU_RS08365	0.65	-0.8
1,871,379	+		PFLU_RS08365	0.65	-1.0
1,871,379	+		PFLU_RS08365	0.65	-0.4
1,871,379	+		PFLU_RS08365	0.65	-0.0
1,871,379	+		PFLU_RS08365	0.65	-1.3
1,871,380	-		PFLU_RS08365	0.66	+2.6
1,871,380	-		PFLU_RS08365	0.66	+4.0
1,871,380	-		PFLU_RS08365	0.66	-1.3
1,871,380	-		PFLU_RS08365	0.66	-0.5
1,871,380	-		PFLU_RS08365	0.66	+0.7
1,871,380	-		PFLU_RS08365	0.66	-0.3
1,871,380	-		PFLU_RS08365	0.66	-0.1
1,871,380	-		PFLU_RS08365	0.66	-0.3
1,871,455	+		PFLU_RS08365	0.73	-2.5
1,871,455	+		PFLU_RS08365	0.73	+2.2
1,871,455	+		PFLU_RS08365	0.73	+0.2
1,871,455	+		PFLU_RS08365	0.73	-2.1
1,871,455	+		PFLU_RS08365	0.73	+1.1
1,871,455	+		PFLU_RS08365	0.73	+0.7
1,871,455	+		PFLU_RS08365	0.73	+1.2
1,871,455	+		PFLU_RS08365	0.73	-2.1
1,871,455	+		PFLU_RS08365	0.73	-0.9
1,871,455	+		PFLU_RS08365	0.73	-1.8
1,871,455	+		PFLU_RS08365	0.73	-1.7
1,871,455	+		PFLU_RS08365	0.73	+1.8
1,871,456	-		PFLU_RS08365	0.73	-1.3
1,871,456	-		PFLU_RS08365	0.73	+2.7
1,871,456	-		PFLU_RS08365	0.73	-1.0
1,871,456	-		PFLU_RS08365	0.73	-1.0
1,871,456	-		PFLU_RS08365	0.73	-1.5
1,871,456	-		PFLU_RS08365	0.73	-0.3
1,871,456	-		PFLU_RS08365	0.73	-0.8
1,871,456	-		PFLU_RS08365	0.73	-0.6
1,871,456	-		PFLU_RS08365	0.73	-0.6
1,871,456	-		PFLU_RS08365	0.73	+0.0
1,871,485	+		PFLU_RS08365	0.76	+0.8
1,871,485	+		PFLU_RS08365	0.76	+0.4
1,871,485	+		PFLU_RS08365	0.76	+0.3
1,871,485	+		PFLU_RS08365	0.76	+0.4
1,871,485	+		PFLU_RS08365	0.76	+0.7
1,871,486	-		PFLU_RS08365	0.77	-0.3
1,871,486	-		PFLU_RS08365	0.77	-1.2
1,871,486	-		PFLU_RS08365	0.77	+1.0
1,871,499	+		PFLU_RS08365	0.78	-0.8
1,871,499	+		PFLU_RS08365	0.78	-2.1
1,871,499	+		PFLU_RS08365	0.78	-1.6
1,871,499	+		PFLU_RS08365	0.78	+0.6
1,871,500	-		PFLU_RS08365	0.78	+1.3
1,871,500	-		PFLU_RS08365	0.78	+2.0
1,871,520	+		PFLU_RS08365	0.80	+0.2
1,871,521	-		PFLU_RS08365	0.80	-1.0
1,871,521	-		PFLU_RS08365	0.80	-1.0