Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24090 and BPHYT_RS24095 are separated by 39 nucleotides BPHYT_RS24095 and BPHYT_RS24100 are separated by 207 nucleotides BPHYT_RS24100 and BPHYT_RS24105 are separated by 298 nucleotides
BPHYT_RS24090: BPHYT_RS24090 - ubiquinol oxidase subunit II, cyanide insensitive, at 971,375 to 972,379
_RS24090
BPHYT_RS24095: BPHYT_RS24095 - membrane protein, at 972,419 to 973,831
_RS24095
BPHYT_RS24100: BPHYT_RS24100 - hypothetical protein, at 974,039 to 974,299
_RS24100
BPHYT_RS24105: BPHYT_RS24105 - chloroperoxidase, at 974,598 to 975,419
_RS24105
Position (kb) 972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.877 kb on + strand, within BPHYT_RS24090 at 972.327 kb on + strand at 972.328 kb on - strand at 972.400 kb on - strand at 973.271 kb on - strand, within BPHYT_RS24095 at 973.531 kb on - strand, within BPHYT_RS24095 at 973.680 kb on + strand, within BPHYT_RS24095 at 973.681 kb on - strand, within BPHYT_RS24095 at 973.683 kb on + strand, within BPHYT_RS24095 at 973.684 kb on - strand, within BPHYT_RS24095 at 974.298 kb on - strand at 974.314 kb on - strand at 974.394 kb on - strand at 974.582 kb on + strand at 974.582 kb on + strand at 974.582 kb on + strand at 974.814 kb on + strand, within BPHYT_RS24105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 971,877 + BPHYT_RS24090 0.50 -3.0 972,327 + -0.9 972,328 - -1.2 972,400 - +1.9 973,271 - BPHYT_RS24095 0.60 +1.1 973,531 - BPHYT_RS24095 0.79 +0.1 973,680 + BPHYT_RS24095 0.89 -0.8 973,681 - BPHYT_RS24095 0.89 -0.2 973,683 + BPHYT_RS24095 0.89 -0.1 973,684 - BPHYT_RS24095 0.90 -0.8 974,298 - +0.2 974,314 - -0.3 974,394 - -0.2 974,582 + +0.6 974,582 + +1.5 974,582 + -3.1 974,814 + BPHYT_RS24105 0.26 -0.4
Or see this region's nucleotide sequence