Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22205

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22200 and BPHYT_RS22205 are separated by 12 nucleotidesBPHYT_RS22205 and BPHYT_RS22210 overlap by 7 nucleotidesBPHYT_RS22210 and BPHYT_RS22215 overlap by 4 nucleotides BPHYT_RS22200: BPHYT_RS22200 - cardiolipin synthetase, at 538,727 to 539,989 _RS22200 BPHYT_RS22205: BPHYT_RS22205 - hypothetical protein, at 540,002 to 540,958 _RS22205 BPHYT_RS22210: BPHYT_RS22210 - metal ABC transporter substrate-binding protein, at 540,952 to 541,746 _RS22210 BPHYT_RS22215: BPHYT_RS22215 - hypothetical protein, at 541,743 to 542,828 _RS22215 Position (kb) 540 541Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 539.347 kb on + strand, within BPHYT_RS22200at 539.348 kb on - strand, within BPHYT_RS22200at 539.412 kb on - strand, within BPHYT_RS22200at 539.453 kb on - strand, within BPHYT_RS22200at 539.889 kb on + strandat 540.025 kb on - strandat 540.237 kb on - strand, within BPHYT_RS22205at 540.237 kb on - strand, within BPHYT_RS22205at 540.522 kb on + strand, within BPHYT_RS22205at 540.908 kb on - strandat 541.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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539,347 + BPHYT_RS22200 0.49 +0.3
539,348 - BPHYT_RS22200 0.49 +0.2
539,412 - BPHYT_RS22200 0.54 -0.0
539,453 - BPHYT_RS22200 0.57 +0.3
539,889 + +0.8
540,025 - +0.6
540,237 - BPHYT_RS22205 0.25 +0.3
540,237 - BPHYT_RS22205 0.25 -4.0
540,522 + BPHYT_RS22205 0.54 -2.5
540,908 - +0.2
541,958 - -0.4

Or see this region's nucleotide sequence