Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20875

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20870 and BPHYT_RS20875 are separated by 523 nucleotidesBPHYT_RS20875 and BPHYT_RS20880 are separated by 197 nucleotidesBPHYT_RS20880 and BPHYT_RS20885 are separated by 187 nucleotides BPHYT_RS20870: BPHYT_RS20870 - cysteine hydrolase, at 244,374 to 244,943 _RS20870 BPHYT_RS20875: BPHYT_RS20875 - hypothetical protein, at 245,467 to 245,748 _RS20875 BPHYT_RS20880: BPHYT_RS20880 - polyketide cyclase, at 245,946 to 246,491 _RS20880 BPHYT_RS20885: BPHYT_RS20885 - nuclear protein SET, at 246,679 to 247,119 _RS20885 Position (kb) 245 246Strain fitness (log2 ratio) -3 -2 -1 0 1at 244.475 kb on - strand, within BPHYT_RS20870at 244.475 kb on - strand, within BPHYT_RS20870at 244.870 kb on - strand, within BPHYT_RS20870at 246.089 kb on - strand, within BPHYT_RS20880at 246.635 kb on - strandat 246.678 kb on + strandat 246.695 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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244,475 - BPHYT_RS20870 0.18 +0.6
244,475 - BPHYT_RS20870 0.18 +0.6
244,870 - BPHYT_RS20870 0.87 +1.0
246,089 - BPHYT_RS20880 0.26 -3.7
246,635 - -0.1
246,678 + +1.3
246,695 + +0.3

Or see this region's nucleotide sequence