Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19140

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19135 and BPHYT_RS19140 are separated by 53 nucleotidesBPHYT_RS19140 and BPHYT_RS19145 are separated by 46 nucleotidesBPHYT_RS19145 and BPHYT_RS19150 are separated by 8 nucleotides BPHYT_RS19135: BPHYT_RS19135 - Rieske (2Fe-2S) protein, at 4,292,923 to 4,293,912 _RS19135 BPHYT_RS19140: BPHYT_RS19140 - hypothetical protein, at 4,293,966 to 4,294,667 _RS19140 BPHYT_RS19145: BPHYT_RS19145 - type 11 methyltransferase, at 4,294,714 to 4,295,292 _RS19145 BPHYT_RS19150: BPHYT_RS19150 - phytanoyl-CoA dioxygenase, at 4,295,301 to 4,296,104 _RS19150 Position (kb) 4293 4294 4295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4293.075 kb on + strand, within BPHYT_RS19135at 4293.076 kb on - strand, within BPHYT_RS19135at 4293.076 kb on - strand, within BPHYT_RS19135at 4293.105 kb on + strand, within BPHYT_RS19135at 4293.158 kb on - strand, within BPHYT_RS19135at 4293.295 kb on + strand, within BPHYT_RS19135at 4293.295 kb on + strand, within BPHYT_RS19135at 4293.373 kb on + strand, within BPHYT_RS19135at 4293.388 kb on + strand, within BPHYT_RS19135at 4293.389 kb on - strand, within BPHYT_RS19135at 4293.424 kb on + strand, within BPHYT_RS19135at 4293.514 kb on + strand, within BPHYT_RS19135at 4293.598 kb on + strand, within BPHYT_RS19135at 4293.598 kb on + strand, within BPHYT_RS19135at 4293.598 kb on + strand, within BPHYT_RS19135at 4293.599 kb on - strand, within BPHYT_RS19135at 4293.599 kb on - strand, within BPHYT_RS19135at 4293.600 kb on + strand, within BPHYT_RS19135at 4293.600 kb on + strand, within BPHYT_RS19135at 4293.600 kb on + strand, within BPHYT_RS19135at 4293.601 kb on - strand, within BPHYT_RS19135at 4293.601 kb on - strand, within BPHYT_RS19135at 4293.611 kb on - strand, within BPHYT_RS19135at 4293.613 kb on - strand, within BPHYT_RS19135at 4293.613 kb on - strand, within BPHYT_RS19135at 4293.613 kb on - strand, within BPHYT_RS19135at 4293.643 kb on + strand, within BPHYT_RS19135at 4293.644 kb on - strand, within BPHYT_RS19135at 4293.722 kb on - strand, within BPHYT_RS19135at 4293.722 kb on - strand, within BPHYT_RS19135at 4293.803 kb on + strand, within BPHYT_RS19135at 4293.872 kb on - strandat 4294.104 kb on - strand, within BPHYT_RS19140at 4294.180 kb on - strand, within BPHYT_RS19140at 4294.190 kb on + strand, within BPHYT_RS19140at 4294.191 kb on - strand, within BPHYT_RS19140at 4294.191 kb on - strand, within BPHYT_RS19140at 4294.411 kb on - strand, within BPHYT_RS19140at 4294.462 kb on - strand, within BPHYT_RS19140at 4294.567 kb on - strand, within BPHYT_RS19140at 4294.567 kb on - strand, within BPHYT_RS19140at 4294.599 kb on + strandat 4294.599 kb on + strandat 4294.599 kb on + strandat 4294.681 kb on + strandat 4294.685 kb on - strandat 4294.741 kb on - strandat 4295.067 kb on - strand, within BPHYT_RS19145at 4295.389 kb on + strand, within BPHYT_RS19150at 4295.477 kb on - strand, within BPHYT_RS19150at 4295.547 kb on + strand, within BPHYT_RS19150at 4295.547 kb on + strand, within BPHYT_RS19150at 4295.548 kb on - strand, within BPHYT_RS19150at 4295.548 kb on - strand, within BPHYT_RS19150at 4295.548 kb on - strand, within BPHYT_RS19150at 4295.548 kb on - strand, within BPHYT_RS19150at 4295.549 kb on + strand, within BPHYT_RS19150at 4295.608 kb on - strand, within BPHYT_RS19150at 4295.608 kb on - strand, within BPHYT_RS19150

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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4,293,075 + BPHYT_RS19135 0.15 +0.6
4,293,076 - BPHYT_RS19135 0.15 +0.0
4,293,076 - BPHYT_RS19135 0.15 -1.9
4,293,105 + BPHYT_RS19135 0.18 +0.1
4,293,158 - BPHYT_RS19135 0.24 -0.3
4,293,295 + BPHYT_RS19135 0.38 -0.8
4,293,295 + BPHYT_RS19135 0.38 -0.8
4,293,373 + BPHYT_RS19135 0.45 +0.2
4,293,388 + BPHYT_RS19135 0.47 -0.1
4,293,389 - BPHYT_RS19135 0.47 +0.2
4,293,424 + BPHYT_RS19135 0.51 -0.3
4,293,514 + BPHYT_RS19135 0.60 +0.1
4,293,598 + BPHYT_RS19135 0.68 -0.2
4,293,598 + BPHYT_RS19135 0.68 +0.6
4,293,598 + BPHYT_RS19135 0.68 -0.1
4,293,599 - BPHYT_RS19135 0.68 -1.8
4,293,599 - BPHYT_RS19135 0.68 +0.3
4,293,600 + BPHYT_RS19135 0.68 +0.2
4,293,600 + BPHYT_RS19135 0.68 +0.3
4,293,600 + BPHYT_RS19135 0.68 +0.6
4,293,601 - BPHYT_RS19135 0.68 -0.7
4,293,601 - BPHYT_RS19135 0.68 -1.7
4,293,611 - BPHYT_RS19135 0.69 +1.1
4,293,613 - BPHYT_RS19135 0.70 +0.5
4,293,613 - BPHYT_RS19135 0.70 +3.4
4,293,613 - BPHYT_RS19135 0.70 -0.4
4,293,643 + BPHYT_RS19135 0.73 -1.3
4,293,644 - BPHYT_RS19135 0.73 +0.6
4,293,722 - BPHYT_RS19135 0.81 +0.6
4,293,722 - BPHYT_RS19135 0.81 +1.0
4,293,803 + BPHYT_RS19135 0.89 +1.1
4,293,872 - -1.7
4,294,104 - BPHYT_RS19140 0.20 +1.2
4,294,180 - BPHYT_RS19140 0.30 +0.1
4,294,190 + BPHYT_RS19140 0.32 +0.1
4,294,191 - BPHYT_RS19140 0.32 +0.9
4,294,191 - BPHYT_RS19140 0.32 +0.2
4,294,411 - BPHYT_RS19140 0.63 -0.6
4,294,462 - BPHYT_RS19140 0.71 -0.0
4,294,567 - BPHYT_RS19140 0.86 -0.5
4,294,567 - BPHYT_RS19140 0.86 -0.5
4,294,599 + -0.4
4,294,599 + -2.3
4,294,599 + +0.2
4,294,681 + -0.0
4,294,685 - -0.6
4,294,741 - -1.0
4,295,067 - BPHYT_RS19145 0.61 +0.9
4,295,389 + BPHYT_RS19150 0.11 +1.1
4,295,477 - BPHYT_RS19150 0.22 +0.9
4,295,547 + BPHYT_RS19150 0.31 -0.5
4,295,547 + BPHYT_RS19150 0.31 +0.4
4,295,548 - BPHYT_RS19150 0.31 -0.3
4,295,548 - BPHYT_RS19150 0.31 +0.1
4,295,548 - BPHYT_RS19150 0.31 -0.2
4,295,548 - BPHYT_RS19150 0.31 -0.4
4,295,549 + BPHYT_RS19150 0.31 -0.6
4,295,608 - BPHYT_RS19150 0.38 +0.5
4,295,608 - BPHYT_RS19150 0.38 -0.8

Or see this region's nucleotide sequence