Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18585 and BPHYT_RS18590 are separated by 22 nucleotides BPHYT_RS18590 and BPHYT_RS18595 are separated by 749 nucleotides BPHYT_RS18595 and BPHYT_RS18600 overlap by 4 nucleotides BPHYT_RS18600 and BPHYT_RS18605 are separated by 26 nucleotides
BPHYT_RS18585: BPHYT_RS18585 - hypothetical protein, at 4,180,631 to 4,181,821
_RS18585
BPHYT_RS18590: BPHYT_RS18590 - hypothetical protein, at 4,181,844 to 4,182,038
_RS18590
BPHYT_RS18595: BPHYT_RS18595 - multifunctional CCA protein, at 4,182,788 to 4,184,020
_RS18595
BPHYT_RS18600: BPHYT_RS18600 - glutathione S-transferase, at 4,184,017 to 4,184,670
_RS18600
BPHYT_RS18605: BPHYT_RS18605 - NAD-dependent dehydratase, at 4,184,697 to 4,185,650
_RS18605
Position (kb)
4182
4183
4184
4185 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4181.813 kb on - strand at 4181.813 kb on - strand at 4181.813 kb on - strand at 4181.813 kb on - strand at 4181.865 kb on - strand, within BPHYT_RS18590 at 4182.036 kb on + strand at 4182.036 kb on + strand at 4182.127 kb on - strand at 4182.158 kb on - strand at 4182.158 kb on - strand at 4182.714 kb on + strand at 4184.011 kb on - strand at 4184.115 kb on - strand, within BPHYT_RS18600 at 4184.611 kb on + strand at 4184.643 kb on - strand at 4184.677 kb on + strand at 4184.678 kb on - strand at 4184.758 kb on + strand at 4184.971 kb on + strand, within BPHYT_RS18605 at 4185.019 kb on + strand, within BPHYT_RS18605 at 4185.020 kb on - strand, within BPHYT_RS18605 at 4185.020 kb on - strand, within BPHYT_RS18605
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 4,181,813 - -0.5 4,181,813 - -0.8 4,181,813 - -1.4 4,181,813 - -2.8 4,181,865 - BPHYT_RS18590 0.11 -1.5 4,182,036 + +0.8 4,182,036 + +0.1 4,182,127 - +0.9 4,182,158 - -0.9 4,182,158 - -0.6 4,182,714 + -0.7 4,184,011 - +0.5 4,184,115 - BPHYT_RS18600 0.15 -1.4 4,184,611 + -1.9 4,184,643 - -1.1 4,184,677 + -2.6 4,184,678 - +1.1 4,184,758 + -2.4 4,184,971 + BPHYT_RS18605 0.29 -0.9 4,185,019 + BPHYT_RS18605 0.34 -0.6 4,185,020 - BPHYT_RS18605 0.34 -0.6 4,185,020 - BPHYT_RS18605 0.34 -0.4
Or see this region's nucleotide sequence