Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS13455 and BPHYT_RS13460 are separated by 22 nucleotides BPHYT_RS13460 and BPHYT_RS13465 are separated by 45 nucleotides BPHYT_RS13465 and BPHYT_RS13470 are separated by 94 nucleotides
BPHYT_RS13455: BPHYT_RS13455 - methyl-accepting chemotaxis protein, at 3,070,996 to 3,072,795
_RS13455
BPHYT_RS13460: BPHYT_RS13460 - chemotaxis protein, at 3,072,818 to 3,074,398
_RS13460
BPHYT_RS13465: BPHYT_RS13465 - hypothetical protein, at 3,074,444 to 3,074,824
_RS13465
BPHYT_RS13470: BPHYT_RS13470 - arylsulfate sulfotransferase, at 3,074,919 to 3,075,269
_RS13470
Position (kb) 3072
3073
3074
3075 Strain fitness (log2 ratio) -1
0
1 at 3072.827 kb on + strand at 3072.828 kb on - strand at 3072.829 kb on + strand at 3073.220 kb on + strand, within BPHYT_RS13460 at 3073.399 kb on + strand, within BPHYT_RS13460 at 3074.153 kb on - strand, within BPHYT_RS13460 at 3074.423 kb on + strand at 3074.563 kb on - strand, within BPHYT_RS13465 at 3074.631 kb on + strand, within BPHYT_RS13465 at 3074.632 kb on - strand, within BPHYT_RS13465 at 3074.765 kb on - strand, within BPHYT_RS13465 at 3074.839 kb on + strand at 3075.022 kb on + strand, within BPHYT_RS13470 at 3075.257 kb on - strand at 3075.259 kb on - strand at 3075.350 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 3,072,827 + +0.7 3,072,828 - -0.2 3,072,829 + +0.2 3,073,220 + BPHYT_RS13460 0.25 -0.8 3,073,399 + BPHYT_RS13460 0.37 +0.0 3,074,153 - BPHYT_RS13460 0.84 +0.3 3,074,423 + -1.4 3,074,563 - BPHYT_RS13465 0.31 +0.1 3,074,631 + BPHYT_RS13465 0.49 +0.0 3,074,632 - BPHYT_RS13465 0.49 +1.4 3,074,765 - BPHYT_RS13465 0.84 +0.3 3,074,839 + +0.3 3,075,022 + BPHYT_RS13470 0.29 -0.9 3,075,257 - +0.2 3,075,259 - -1.3 3,075,350 + -0.1
Or see this region's nucleotide sequence