Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02315

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02310 and BPHYT_RS02315 are separated by 286 nucleotidesBPHYT_RS02315 and BPHYT_RS02320 are separated by 118 nucleotides BPHYT_RS02310: BPHYT_RS02310 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 529,946 to 531,016 _RS02310 BPHYT_RS02315: BPHYT_RS02315 - hypothetical protein, at 531,303 to 531,560 _RS02315 BPHYT_RS02320: BPHYT_RS02320 - 3-oxoadipate enol-lactonase, at 531,679 to 532,467 _RS02320 Position (kb) 531 532Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 530.487 kb on + strand, within BPHYT_RS02310at 530.487 kb on + strand, within BPHYT_RS02310at 530.491 kb on - strand, within BPHYT_RS02310at 530.554 kb on + strand, within BPHYT_RS02310at 530.619 kb on + strand, within BPHYT_RS02310at 530.884 kb on - strand, within BPHYT_RS02310at 531.203 kb on - strandat 531.203 kb on - strandat 531.220 kb on + strandat 531.220 kb on + strandat 531.221 kb on - strandat 531.243 kb on + strandat 531.244 kb on - strandat 531.269 kb on + strandat 531.270 kb on - strandat 531.270 kb on - strandat 531.270 kb on - strandat 531.270 kb on - strandat 531.361 kb on - strand, within BPHYT_RS02315at 531.439 kb on + strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.440 kb on - strand, within BPHYT_RS02315at 531.532 kb on + strand, within BPHYT_RS02315at 531.532 kb on + strand, within BPHYT_RS02315at 531.533 kb on - strand, within BPHYT_RS02315at 531.533 kb on - strand, within BPHYT_RS02315at 531.547 kb on + strandat 531.547 kb on + strandat 531.548 kb on - strandat 531.573 kb on + strandat 531.574 kb on - strandat 531.606 kb on + strandat 531.606 kb on + strandat 531.607 kb on - strandat 531.617 kb on + strandat 531.618 kb on - strandat 531.680 kb on + strandat 531.796 kb on + strand, within BPHYT_RS02320at 531.797 kb on - strand, within BPHYT_RS02320at 531.797 kb on - strand, within BPHYT_RS02320at 531.807 kb on + strand, within BPHYT_RS02320at 531.807 kb on + strand, within BPHYT_RS02320at 531.808 kb on - strand, within BPHYT_RS02320at 531.808 kb on - strand, within BPHYT_RS02320at 531.808 kb on - strand, within BPHYT_RS02320at 531.879 kb on + strand, within BPHYT_RS02320at 531.880 kb on - strand, within BPHYT_RS02320at 531.886 kb on + strand, within BPHYT_RS02320at 531.886 kb on + strand, within BPHYT_RS02320at 531.886 kb on + strand, within BPHYT_RS02320at 531.923 kb on + strand, within BPHYT_RS02320at 531.924 kb on - strand, within BPHYT_RS02320at 531.949 kb on + strand, within BPHYT_RS02320at 531.949 kb on + strand, within BPHYT_RS02320at 532.206 kb on + strand, within BPHYT_RS02320at 532.207 kb on - strand, within BPHYT_RS02320at 532.314 kb on - strand, within BPHYT_RS02320at 532.329 kb on - strand, within BPHYT_RS02320at 532.433 kb on + strandat 532.434 kb on - strandat 532.434 kb on - strandat 532.549 kb on + strandat 532.549 kb on + strandat 532.549 kb on + strandat 532.550 kb on - strandat 532.550 kb on - strandat 532.550 kb on - strandat 532.551 kb on + strandat 532.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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530,487 + BPHYT_RS02310 0.51 -0.6
530,487 + BPHYT_RS02310 0.51 -0.7
530,491 - BPHYT_RS02310 0.51 -0.9
530,554 + BPHYT_RS02310 0.57 -0.5
530,619 + BPHYT_RS02310 0.63 +0.6
530,884 - BPHYT_RS02310 0.88 -0.6
531,203 - -3.6
531,203 - -0.5
531,220 + -2.0
531,220 + +1.2
531,221 - +0.2
531,243 + -0.3
531,244 - +0.4
531,269 + +0.5
531,270 - -0.9
531,270 - +2.5
531,270 - -0.1
531,270 - -1.0
531,361 - BPHYT_RS02315 0.22 -1.5
531,439 + BPHYT_RS02315 0.53 -1.2
531,440 - BPHYT_RS02315 0.53 +0.8
531,440 - BPHYT_RS02315 0.53 +1.5
531,440 - BPHYT_RS02315 0.53 -0.5
531,440 - BPHYT_RS02315 0.53 +0.0
531,440 - BPHYT_RS02315 0.53 -0.5
531,440 - BPHYT_RS02315 0.53 -0.7
531,532 + BPHYT_RS02315 0.89 -0.5
531,532 + BPHYT_RS02315 0.89 +0.4
531,533 - BPHYT_RS02315 0.89 +0.4
531,533 - BPHYT_RS02315 0.89 +0.6
531,547 + -0.7
531,547 + -1.7
531,548 - +1.1
531,573 + +0.9
531,574 - -1.0
531,606 + -1.2
531,606 + -0.5
531,607 - -1.3
531,617 + +1.0
531,618 - +0.4
531,680 + -0.9
531,796 + BPHYT_RS02320 0.15 +0.2
531,797 - BPHYT_RS02320 0.15 -0.5
531,797 - BPHYT_RS02320 0.15 +0.2
531,807 + BPHYT_RS02320 0.16 +1.8
531,807 + BPHYT_RS02320 0.16 -0.7
531,808 - BPHYT_RS02320 0.16 +1.1
531,808 - BPHYT_RS02320 0.16 +0.7
531,808 - BPHYT_RS02320 0.16 +0.6
531,879 + BPHYT_RS02320 0.25 +1.1
531,880 - BPHYT_RS02320 0.25 +0.6
531,886 + BPHYT_RS02320 0.26 -0.1
531,886 + BPHYT_RS02320 0.26 +0.5
531,886 + BPHYT_RS02320 0.26 +0.3
531,923 + BPHYT_RS02320 0.31 +0.1
531,924 - BPHYT_RS02320 0.31 +0.3
531,949 + BPHYT_RS02320 0.34 +0.8
531,949 + BPHYT_RS02320 0.34 -0.5
532,206 + BPHYT_RS02320 0.67 +0.4
532,207 - BPHYT_RS02320 0.67 -0.5
532,314 - BPHYT_RS02320 0.80 +0.9
532,329 - BPHYT_RS02320 0.82 +0.4
532,433 + +0.3
532,434 - +0.8
532,434 - -0.5
532,549 + -1.7
532,549 + +0.5
532,549 + -0.9
532,550 - +0.2
532,550 - +0.6
532,550 - +0.2
532,551 + -1.4
532,552 - -3.4

Or see this region's nucleotide sequence