Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01565 and BPHYT_RS01570 are separated by 44 nucleotides BPHYT_RS01570 and BPHYT_RS01575 are separated by 126 nucleotides BPHYT_RS01575 and BPHYT_RS01580 are separated by 61 nucleotides
BPHYT_RS01565: BPHYT_RS01565 - polyphosphate kinase, at 356,552 to 357,391
_RS01565
BPHYT_RS01570: BPHYT_RS01570 - exodeoxyribonuclease III, at 357,436 to 358,215
_RS01570
BPHYT_RS01575: BPHYT_RS01575 - peptidase M48, at 358,342 to 359,142
_RS01575
BPHYT_RS01580: BPHYT_RS01580 - hypothetical protein, at 359,204 to 359,491
_RS01580
Position (kb) 357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 356.522 kb on + strand at 356.523 kb on - strand at 356.591 kb on + strand at 356.960 kb on + strand, within BPHYT_RS01565 at 357.203 kb on + strand, within BPHYT_RS01565 at 357.203 kb on + strand, within BPHYT_RS01565 at 357.203 kb on + strand, within BPHYT_RS01565 at 357.260 kb on + strand, within BPHYT_RS01565 at 357.425 kb on - strand at 357.605 kb on - strand, within BPHYT_RS01570 at 357.631 kb on + strand, within BPHYT_RS01570 at 357.631 kb on + strand, within BPHYT_RS01570 at 357.632 kb on - strand, within BPHYT_RS01570 at 357.634 kb on - strand, within BPHYT_RS01570 at 357.650 kb on - strand, within BPHYT_RS01570 at 357.744 kb on - strand, within BPHYT_RS01570 at 357.760 kb on + strand, within BPHYT_RS01570 at 357.760 kb on + strand, within BPHYT_RS01570 at 357.760 kb on + strand, within BPHYT_RS01570 at 357.760 kb on + strand, within BPHYT_RS01570 at 357.761 kb on - strand, within BPHYT_RS01570 at 357.761 kb on - strand, within BPHYT_RS01570 at 357.761 kb on - strand, within BPHYT_RS01570 at 357.761 kb on - strand, within BPHYT_RS01570 at 357.761 kb on - strand, within BPHYT_RS01570 at 358.036 kb on + strand, within BPHYT_RS01570 at 358.037 kb on - strand, within BPHYT_RS01570 at 358.037 kb on - strand, within BPHYT_RS01570 at 358.066 kb on + strand, within BPHYT_RS01570 at 358.193 kb on - strand at 358.213 kb on + strand at 358.213 kb on + strand at 358.213 kb on + strand at 358.213 kb on + strand at 358.213 kb on + strand at 358.213 kb on + strand at 358.214 kb on - strand at 358.214 kb on - strand at 358.214 kb on - strand at 358.214 kb on - strand at 358.233 kb on - strand at 358.233 kb on - strand at 358.297 kb on + strand at 358.297 kb on + strand at 358.298 kb on - strand at 358.308 kb on - strand at 358.496 kb on + strand, within BPHYT_RS01575 at 358.497 kb on - strand, within BPHYT_RS01575 at 358.497 kb on - strand, within BPHYT_RS01575 at 358.497 kb on - strand, within BPHYT_RS01575 at 358.856 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.886 kb on + strand, within BPHYT_RS01575 at 358.887 kb on - strand, within BPHYT_RS01575 at 358.887 kb on - strand, within BPHYT_RS01575 at 358.887 kb on - strand, within BPHYT_RS01575 at 359.052 kb on - strand, within BPHYT_RS01575 at 359.052 kb on - strand, within BPHYT_RS01575 at 359.052 kb on - strand, within BPHYT_RS01575 at 359.159 kb on + strand at 359.160 kb on - strand at 359.160 kb on - strand at 359.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 356,522 + +0.4 356,523 - -0.7 356,591 + +0.5 356,960 + BPHYT_RS01565 0.49 +1.9 357,203 + BPHYT_RS01565 0.78 -1.4 357,203 + BPHYT_RS01565 0.78 -0.4 357,203 + BPHYT_RS01565 0.78 +0.2 357,260 + BPHYT_RS01565 0.84 +0.6 357,425 - +0.2 357,605 - BPHYT_RS01570 0.22 -2.6 357,631 + BPHYT_RS01570 0.25 -0.3 357,631 + BPHYT_RS01570 0.25 -0.1 357,632 - BPHYT_RS01570 0.25 -1.1 357,634 - BPHYT_RS01570 0.25 -1.6 357,650 - BPHYT_RS01570 0.27 +0.3 357,744 - BPHYT_RS01570 0.39 +0.9 357,760 + BPHYT_RS01570 0.42 -2.4 357,760 + BPHYT_RS01570 0.42 -0.5 357,760 + BPHYT_RS01570 0.42 -1.2 357,760 + BPHYT_RS01570 0.42 -0.3 357,761 - BPHYT_RS01570 0.42 -1.1 357,761 - BPHYT_RS01570 0.42 -0.2 357,761 - BPHYT_RS01570 0.42 -0.1 357,761 - BPHYT_RS01570 0.42 -0.5 357,761 - BPHYT_RS01570 0.42 -0.5 358,036 + BPHYT_RS01570 0.77 -1.7 358,037 - BPHYT_RS01570 0.77 +0.8 358,037 - BPHYT_RS01570 0.77 +0.3 358,066 + BPHYT_RS01570 0.81 +0.6 358,193 - +0.3 358,213 + +0.7 358,213 + -1.1 358,213 + -0.5 358,213 + -1.4 358,213 + -0.4 358,213 + +0.1 358,214 - +1.4 358,214 - -2.2 358,214 - -0.0 358,214 - -0.4 358,233 - -1.2 358,233 - +1.5 358,297 + +1.1 358,297 + +1.8 358,298 - +0.3 358,308 - -0.6 358,496 + BPHYT_RS01575 0.19 -0.4 358,497 - BPHYT_RS01575 0.19 +1.2 358,497 - BPHYT_RS01575 0.19 +0.2 358,497 - BPHYT_RS01575 0.19 +0.2 358,856 + BPHYT_RS01575 0.64 +0.1 358,886 + BPHYT_RS01575 0.68 +1.1 358,886 + BPHYT_RS01575 0.68 +0.9 358,886 + BPHYT_RS01575 0.68 +1.2 358,886 + BPHYT_RS01575 0.68 +0.8 358,886 + BPHYT_RS01575 0.68 -1.0 358,887 - BPHYT_RS01575 0.68 -2.6 358,887 - BPHYT_RS01575 0.68 -2.3 358,887 - BPHYT_RS01575 0.68 +0.6 359,052 - BPHYT_RS01575 0.89 +0.6 359,052 - BPHYT_RS01575 0.89 -0.4 359,052 - BPHYT_RS01575 0.89 -0.4 359,159 + -0.3 359,160 - -0.3 359,160 - +0.2 359,160 - +0.0
Or see this region's nucleotide sequence