Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00980 and BPHYT_RS00985 are separated by 21 nucleotides BPHYT_RS00985 and BPHYT_RS00990 overlap by 50 nucleotides BPHYT_RS00990 and BPHYT_RS00995 are separated by 84 nucleotides
BPHYT_RS00980: BPHYT_RS00980 - GCN5 family acetyltransferase, at 224,753 to 225,199
_RS00980
BPHYT_RS00985: BPHYT_RS00985 - NADPH-dependent FMN reductase, at 225,221 to 225,985
_RS00985
BPHYT_RS00990: BPHYT_RS00990 - MFS transporter, at 225,936 to 227,198
_RS00990
BPHYT_RS00995: BPHYT_RS00995 - integrase, at 227,283 to 228,665
_RS00995
Position (kb) 225
226
227
228 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 225.218 kb on - strand at 225.329 kb on + strand, within BPHYT_RS00985 at 225.353 kb on + strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.399 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.789 kb on - strand, within BPHYT_RS00985 at 225.821 kb on + strand, within BPHYT_RS00985 at 225.823 kb on + strand, within BPHYT_RS00985 at 225.824 kb on - strand, within BPHYT_RS00985 at 226.062 kb on + strand at 226.332 kb on + strand, within BPHYT_RS00990 at 226.332 kb on + strand, within BPHYT_RS00990 at 226.333 kb on - strand, within BPHYT_RS00990 at 226.333 kb on - strand, within BPHYT_RS00990 at 226.377 kb on + strand, within BPHYT_RS00990 at 226.378 kb on - strand, within BPHYT_RS00990 at 226.668 kb on + strand, within BPHYT_RS00990 at 226.765 kb on + strand, within BPHYT_RS00990 at 226.766 kb on - strand, within BPHYT_RS00990 at 227.097 kb on + strand at 227.224 kb on - strand at 227.224 kb on - strand at 227.224 kb on - strand at 227.245 kb on + strand at 227.246 kb on - strand at 227.256 kb on + strand at 227.399 kb on + strand at 227.400 kb on - strand at 227.533 kb on - strand, within BPHYT_RS00995 at 227.535 kb on - strand, within BPHYT_RS00995 at 227.745 kb on - strand, within BPHYT_RS00995 at 227.769 kb on - strand, within BPHYT_RS00995 at 227.769 kb on - strand, within BPHYT_RS00995 at 227.945 kb on - strand, within BPHYT_RS00995 at 227.992 kb on - strand, within BPHYT_RS00995 at 228.004 kb on + strand, within BPHYT_RS00995 at 228.004 kb on + strand, within BPHYT_RS00995 at 228.005 kb on - strand, within BPHYT_RS00995 at 228.107 kb on + strand, within BPHYT_RS00995 at 228.107 kb on + strand, within BPHYT_RS00995
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 225,218 - -1.0 225,329 + BPHYT_RS00985 0.14 -0.3 225,353 + BPHYT_RS00985 0.17 +0.0 225,354 - BPHYT_RS00985 0.17 -0.0 225,354 - BPHYT_RS00985 0.17 +0.3 225,399 + BPHYT_RS00985 0.23 -0.6 225,788 + BPHYT_RS00985 0.74 -2.1 225,788 + BPHYT_RS00985 0.74 +0.6 225,789 - BPHYT_RS00985 0.74 -0.1 225,821 + BPHYT_RS00985 0.78 +1.1 225,823 + BPHYT_RS00985 0.79 +0.6 225,824 - BPHYT_RS00985 0.79 -2.3 226,062 + -0.7 226,332 + BPHYT_RS00990 0.31 +0.3 226,332 + BPHYT_RS00990 0.31 -0.4 226,333 - BPHYT_RS00990 0.31 +1.5 226,333 - BPHYT_RS00990 0.31 +2.0 226,377 + BPHYT_RS00990 0.35 -0.1 226,378 - BPHYT_RS00990 0.35 -2.9 226,668 + BPHYT_RS00990 0.58 +0.2 226,765 + BPHYT_RS00990 0.66 -0.2 226,766 - BPHYT_RS00990 0.66 +0.8 227,097 + -0.5 227,224 - -4.1 227,224 - +0.0 227,224 - -2.0 227,245 + -0.3 227,246 - -3.8 227,256 + -1.5 227,399 + +0.9 227,400 - -0.8 227,533 - BPHYT_RS00995 0.18 -3.8 227,535 - BPHYT_RS00995 0.18 +0.4 227,745 - BPHYT_RS00995 0.33 +0.5 227,769 - BPHYT_RS00995 0.35 -0.7 227,769 - BPHYT_RS00995 0.35 -0.8 227,945 - BPHYT_RS00995 0.48 +0.3 227,992 - BPHYT_RS00995 0.51 -3.1 228,004 + BPHYT_RS00995 0.52 -0.4 228,004 + BPHYT_RS00995 0.52 +0.5 228,005 - BPHYT_RS00995 0.52 +1.1 228,107 + BPHYT_RS00995 0.60 -2.1 228,107 + BPHYT_RS00995 0.60 -0.0
Or see this region's nucleotide sequence