Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00975 and BPHYT_RS00980 are separated by 9 nucleotides BPHYT_RS00980 and BPHYT_RS00985 are separated by 21 nucleotides BPHYT_RS00985 and BPHYT_RS00990 overlap by 50 nucleotides
BPHYT_RS00975: BPHYT_RS00975 - arsenic transporter, at 223,682 to 224,743
_RS00975
BPHYT_RS00980: BPHYT_RS00980 - GCN5 family acetyltransferase, at 224,753 to 225,199
_RS00980
BPHYT_RS00985: BPHYT_RS00985 - NADPH-dependent FMN reductase, at 225,221 to 225,985
_RS00985
BPHYT_RS00990: BPHYT_RS00990 - MFS transporter, at 225,936 to 227,198
_RS00990
Position (kb) 224
225
226 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 224.063 kb on + strand, within BPHYT_RS00975 at 224.063 kb on + strand, within BPHYT_RS00975 at 224.254 kb on + strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975 at 224.280 kb on - strand, within BPHYT_RS00975 at 224.763 kb on + strand at 224.921 kb on + strand, within BPHYT_RS00980 at 225.218 kb on - strand at 225.329 kb on + strand, within BPHYT_RS00985 at 225.353 kb on + strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.354 kb on - strand, within BPHYT_RS00985 at 225.399 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.788 kb on + strand, within BPHYT_RS00985 at 225.789 kb on - strand, within BPHYT_RS00985 at 225.821 kb on + strand, within BPHYT_RS00985 at 225.823 kb on + strand, within BPHYT_RS00985 at 225.824 kb on - strand, within BPHYT_RS00985 at 226.062 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 224,063 + BPHYT_RS00975 0.36 +0.0 224,063 + BPHYT_RS00975 0.36 +0.0 224,254 + BPHYT_RS00975 0.54 +0.4 224,280 - BPHYT_RS00975 0.56 +0.2 224,280 - BPHYT_RS00975 0.56 +0.1 224,763 + -0.6 224,921 + BPHYT_RS00980 0.38 -3.5 225,218 - -1.0 225,329 + BPHYT_RS00985 0.14 -0.3 225,353 + BPHYT_RS00985 0.17 +0.0 225,354 - BPHYT_RS00985 0.17 -0.0 225,354 - BPHYT_RS00985 0.17 +0.3 225,399 + BPHYT_RS00985 0.23 -0.6 225,788 + BPHYT_RS00985 0.74 -2.1 225,788 + BPHYT_RS00985 0.74 +0.6 225,789 - BPHYT_RS00985 0.74 -0.1 225,821 + BPHYT_RS00985 0.78 +1.1 225,823 + BPHYT_RS00985 0.79 +0.6 225,824 - BPHYT_RS00985 0.79 -2.3 226,062 + -0.7
Or see this region's nucleotide sequence