Experiment: SJC12_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3922 and BT3923 are separated by 7 nucleotides BT3923 and BT3924 are separated by 0 nucleotides BT3924 and BT3925 are separated by 223 nucleotides BT3925 and BT3926 are separated by 18 nucleotides
BT3922: BT3922 - putative ThiJ family intracellular protease/amidase (NCBI ptt file), at 5,095,823 to 5,096,374
BT3922
BT3923: BT3923 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (NCBI ptt file), at 5,096,382 to 5,097,041
BT3923
BT3924: BT3924 - ATP-dependent DNA helicase recG (NCBI ptt file), at 5,097,042 to 5,099,138
BT3924
BT3925: BT3925 - nucleoside diphosphate kinase (NCBI ptt file), at 5,099,362 to 5,099,826
BT3925
BT3926: BT3926 - putative peptidase (NCBI ptt file), at 5,099,845 to 5,100,717
BT3926
Position (kb) 5097
5098
5099
5100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5096.053 kb on + strand, within BT3922 at 5096.257 kb on + strand, within BT3922 at 5096.257 kb on + strand, within BT3922 at 5096.257 kb on + strand, within BT3922 at 5096.287 kb on + strand, within BT3922 at 5096.349 kb on + strand at 5096.843 kb on + strand, within BT3923 at 5098.443 kb on - strand, within BT3924 at 5099.339 kb on + strand at 5099.445 kb on + strand, within BT3925 at 5099.495 kb on + strand, within BT3925 at 5099.495 kb on + strand, within BT3925 at 5099.587 kb on + strand, within BT3925 at 5099.619 kb on + strand, within BT3925 at 5099.637 kb on + strand, within BT3925 at 5099.709 kb on + strand, within BT3925 at 5099.771 kb on + strand, within BT3925 at 5099.806 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction SJC12_cps8_0.1MOI remove 5,096,053 + BT3922 0.42 -1.7 5,096,257 + BT3922 0.79 -2.3 5,096,257 + BT3922 0.79 -3.0 5,096,257 + BT3922 0.79 -1.2 5,096,287 + BT3922 0.84 -3.0 5,096,349 + -1.6 5,096,843 + BT3923 0.70 -1.9 5,098,443 - BT3924 0.67 -2.0 5,099,339 + -1.1 5,099,445 + BT3925 0.18 -1.0 5,099,495 + BT3925 0.29 +0.1 5,099,495 + BT3925 0.29 -0.6 5,099,587 + BT3925 0.48 -1.4 5,099,619 + BT3925 0.55 -1.4 5,099,637 + BT3925 0.59 -2.1 5,099,709 + BT3925 0.75 +0.0 5,099,771 + BT3925 0.88 -0.0 5,099,806 + +4.3
Or see this region's nucleotide sequence