Experiment: SJC12_cps8_0.1MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0197 and BT0198 are separated by 309 nucleotides BT0198 and BT0199 are separated by 75 nucleotides BT0199 and BT0200 are separated by 253 nucleotides
BT0197: BT0197 - hypothetical protein (NCBI ptt file), at 211,460 to 212,059
BT0197
BT0198: BT0198 - hypothetical protein (NCBI ptt file), at 212,369 to 214,273
BT0198
BT0199: BT0199 - conserved hypothetical protein (NCBI ptt file), at 214,349 to 214,840
BT0199
BT0200: BT0200 - ATP phosphoribosyltransferase (NCBI ptt file), at 215,094 to 215,945
BT0200
Position (kb) 212
213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 211.375 kb on + strand at 211.416 kb on + strand at 211.526 kb on - strand, within BT0197 at 211.584 kb on + strand, within BT0197 at 211.745 kb on + strand, within BT0197 at 211.842 kb on - strand, within BT0197 at 211.872 kb on - strand, within BT0197 at 211.872 kb on - strand, within BT0197 at 211.930 kb on + strand, within BT0197 at 211.956 kb on + strand, within BT0197 at 212.027 kb on - strand at 212.071 kb on + strand at 212.074 kb on + strand at 212.079 kb on + strand at 212.089 kb on + strand at 212.143 kb on - strand at 212.158 kb on + strand at 212.299 kb on + strand at 212.300 kb on - strand at 212.310 kb on - strand at 212.383 kb on + strand at 212.434 kb on - strand at 212.443 kb on - strand at 212.450 kb on - strand at 212.526 kb on - strand at 212.527 kb on + strand at 212.527 kb on + strand at 212.641 kb on + strand, within BT0198 at 212.698 kb on - strand, within BT0198 at 212.718 kb on - strand, within BT0198 at 212.876 kb on + strand, within BT0198 at 213.070 kb on - strand, within BT0198 at 213.070 kb on - strand, within BT0198 at 213.106 kb on + strand, within BT0198 at 213.138 kb on - strand, within BT0198 at 213.140 kb on - strand, within BT0198 at 213.160 kb on + strand, within BT0198 at 213.161 kb on - strand, within BT0198 at 213.166 kb on - strand, within BT0198 at 213.166 kb on - strand, within BT0198 at 213.380 kb on - strand, within BT0198 at 213.501 kb on - strand, within BT0198 at 213.558 kb on + strand, within BT0198 at 213.626 kb on + strand, within BT0198 at 213.629 kb on - strand, within BT0198 at 213.648 kb on + strand, within BT0198 at 213.648 kb on + strand, within BT0198 at 213.659 kb on - strand, within BT0198 at 213.793 kb on - strand, within BT0198 at 213.794 kb on + strand, within BT0198 at 213.794 kb on + strand, within BT0198 at 213.797 kb on - strand, within BT0198 at 213.797 kb on - strand, within BT0198 at 213.798 kb on + strand, within BT0198 at 213.871 kb on + strand, within BT0198 at 213.938 kb on - strand, within BT0198 at 214.023 kb on + strand, within BT0198 at 214.097 kb on + strand at 214.215 kb on + strand at 214.348 kb on + strand at 214.469 kb on - strand, within BT0199 at 214.630 kb on + strand, within BT0199 at 214.702 kb on + strand, within BT0199 at 214.728 kb on + strand, within BT0199 at 214.732 kb on + strand, within BT0199 at 214.751 kb on + strand, within BT0199 at 214.922 kb on - strand at 214.988 kb on + strand at 214.998 kb on - strand at 215.004 kb on - strand at 215.190 kb on - strand, within BT0200 at 215.230 kb on + strand, within BT0200
Per-strain Table
Position Strand Gene LocusTag Fraction SJC12_cps8_0.1MOI remove 211,375 + +1.6 211,416 + -0.8 211,526 - BT0197 0.11 -1.5 211,584 + BT0197 0.21 -2.4 211,745 + BT0197 0.47 -0.4 211,842 - BT0197 0.64 -0.5 211,872 - BT0197 0.69 +1.6 211,872 - BT0197 0.69 +0.7 211,930 + BT0197 0.78 +0.0 211,956 + BT0197 0.83 -1.6 212,027 - +0.3 212,071 + -2.7 212,074 + -0.5 212,079 + -3.3 212,089 + -1.6 212,143 - -1.0 212,158 + +0.6 212,299 + +1.0 212,300 - +1.7 212,310 - -1.0 212,383 + -1.0 212,434 - -0.6 212,443 - +2.0 212,450 - -2.3 212,526 - +0.8 212,527 + -0.2 212,527 + +0.7 212,641 + BT0198 0.14 +1.0 212,698 - BT0198 0.17 +2.3 212,718 - BT0198 0.18 -1.0 212,876 + BT0198 0.27 +0.3 213,070 - BT0198 0.37 -0.9 213,070 - BT0198 0.37 -1.0 213,106 + BT0198 0.39 -1.3 213,138 - BT0198 0.40 -0.8 213,140 - BT0198 0.40 +1.7 213,160 + BT0198 0.42 -2.7 213,161 - BT0198 0.42 +0.6 213,166 - BT0198 0.42 +0.5 213,166 - BT0198 0.42 -1.6 213,380 - BT0198 0.53 -0.7 213,501 - BT0198 0.59 -1.6 213,558 + BT0198 0.62 -0.6 213,626 + BT0198 0.66 -0.7 213,629 - BT0198 0.66 -2.0 213,648 + BT0198 0.67 -0.6 213,648 + BT0198 0.67 -2.9 213,659 - BT0198 0.68 -2.5 213,793 - BT0198 0.75 -1.6 213,794 + BT0198 0.75 -1.4 213,794 + BT0198 0.75 +0.3 213,797 - BT0198 0.75 +1.0 213,797 - BT0198 0.75 -1.6 213,798 + BT0198 0.75 -0.4 213,871 + BT0198 0.79 +0.6 213,938 - BT0198 0.82 -2.1 214,023 + BT0198 0.87 -1.1 214,097 + -1.2 214,215 + +1.6 214,348 + +1.0 214,469 - BT0199 0.24 +0.0 214,630 + BT0199 0.57 +0.5 214,702 + BT0199 0.72 -3.4 214,728 + BT0199 0.77 +0.0 214,732 + BT0199 0.78 -0.8 214,751 + BT0199 0.82 +0.0 214,922 - -1.1 214,988 + +0.3 214,998 - -3.0 215,004 - -2.0 215,190 - BT0200 0.11 -0.9 215,230 + BT0200 0.16 -0.1
Or see this region's nucleotide sequence