Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27680 and BPHYT_RS27685 are separated by 37 nucleotides BPHYT_RS27685 and BPHYT_RS27690 are separated by 9 nucleotides BPHYT_RS27690 and BPHYT_RS27695 are separated by 81 nucleotides
BPHYT_RS27680: BPHYT_RS27680 - arginine deiminase, at 1,775,902 to 1,777,119
_RS27680
BPHYT_RS27685: BPHYT_RS27685 - ornithine carbamoyltransferase, at 1,777,157 to 1,778,155
_RS27685
BPHYT_RS27690: BPHYT_RS27690 - carbamate kinase, at 1,778,165 to 1,779,073
_RS27690
BPHYT_RS27695: BPHYT_RS27695 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 1,779,155 to 1,780,558
_RS27695
Position (kb) 1777
1778
1779 Strain fitness (log2 ratio) -1
0
1
2 at 1776.456 kb on + strand, within BPHYT_RS27680 at 1776.460 kb on + strand, within BPHYT_RS27680 at 1776.461 kb on - strand, within BPHYT_RS27680 at 1777.000 kb on - strand at 1777.263 kb on - strand, within BPHYT_RS27685 at 1777.386 kb on - strand, within BPHYT_RS27685 at 1777.637 kb on + strand, within BPHYT_RS27685 at 1777.845 kb on - strand, within BPHYT_RS27685 at 1778.023 kb on - strand, within BPHYT_RS27685 at 1778.120 kb on - strand at 1778.549 kb on + strand, within BPHYT_RS27690 at 1778.785 kb on + strand, within BPHYT_RS27690 at 1779.079 kb on + strand at 1779.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 1,776,456 + BPHYT_RS27680 0.45 +0.1 1,776,460 + BPHYT_RS27680 0.46 +0.2 1,776,461 - BPHYT_RS27680 0.46 +0.4 1,777,000 - +2.0 1,777,263 - BPHYT_RS27685 0.11 +1.8 1,777,386 - BPHYT_RS27685 0.23 -0.8 1,777,637 + BPHYT_RS27685 0.48 +0.0 1,777,845 - BPHYT_RS27685 0.69 -1.3 1,778,023 - BPHYT_RS27685 0.87 +0.4 1,778,120 - +1.0 1,778,549 + BPHYT_RS27690 0.42 -0.0 1,778,785 + BPHYT_RS27690 0.68 +0.5 1,779,079 + -0.9 1,779,079 + -0.7
Or see this region's nucleotide sequence