Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27680

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27675 and BPHYT_RS27680 are separated by 25 nucleotidesBPHYT_RS27680 and BPHYT_RS27685 are separated by 37 nucleotides BPHYT_RS27675: BPHYT_RS27675 - amino acid APC transporter, at 1,774,395 to 1,775,876 _RS27675 BPHYT_RS27680: BPHYT_RS27680 - arginine deiminase, at 1,775,902 to 1,777,119 _RS27680 BPHYT_RS27685: BPHYT_RS27685 - ornithine carbamoyltransferase, at 1,777,157 to 1,778,155 _RS27685 Position (kb) 1775 1776 1777 1778Strain fitness (log2 ratio) -1 0 1 2at 1775.035 kb on + strand, within BPHYT_RS27675at 1775.574 kb on + strand, within BPHYT_RS27675at 1775.575 kb on - strand, within BPHYT_RS27675at 1775.728 kb on - strandat 1775.874 kb on + strandat 1776.020 kb on + strandat 1776.456 kb on + strand, within BPHYT_RS27680at 1776.460 kb on + strand, within BPHYT_RS27680at 1776.461 kb on - strand, within BPHYT_RS27680at 1777.000 kb on - strandat 1777.263 kb on - strand, within BPHYT_RS27685at 1777.386 kb on - strand, within BPHYT_RS27685at 1777.637 kb on + strand, within BPHYT_RS27685at 1777.845 kb on - strand, within BPHYT_RS27685at 1778.023 kb on - strand, within BPHYT_RS27685

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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1,775,035 + BPHYT_RS27675 0.43 +0.8
1,775,574 + BPHYT_RS27675 0.80 +0.3
1,775,575 - BPHYT_RS27675 0.80 -0.6
1,775,728 - +0.9
1,775,874 + +0.5
1,776,020 + +0.4
1,776,456 + BPHYT_RS27680 0.45 +0.1
1,776,460 + BPHYT_RS27680 0.46 +0.2
1,776,461 - BPHYT_RS27680 0.46 +0.4
1,777,000 - +2.0
1,777,263 - BPHYT_RS27685 0.11 +1.8
1,777,386 - BPHYT_RS27685 0.23 -0.8
1,777,637 + BPHYT_RS27685 0.48 +0.0
1,777,845 - BPHYT_RS27685 0.69 -1.3
1,778,023 - BPHYT_RS27685 0.87 +0.4

Or see this region's nucleotide sequence