Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24015

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24005 and BPHYT_RS24010 are separated by 14 nucleotidesBPHYT_RS24010 and BPHYT_RS24015 are separated by 35 nucleotidesBPHYT_RS24015 and BPHYT_RS24020 are separated by 38 nucleotides BPHYT_RS24005: BPHYT_RS24005 - L-histidine ABC transporter, permease component 1 (from data), at 951,442 to 952,164 _RS24005 BPHYT_RS24010: BPHYT_RS24010 - L-histidine ABC transporter, permease component 2 (from data), at 952,179 to 952,931 _RS24010 BPHYT_RS24015: BPHYT_RS24015 - L-histidine ABC transporter, ATPase component (from data), at 952,967 to 953,758 _RS24015 BPHYT_RS24020: BPHYT_RS24020 - phenylalanine/histidine ammonia-lyase, at 953,797 to 955,446 _RS24020 Position (kb) 952 953 954Strain fitness (log2 ratio) -1 0 1at 952.039 kb on + strand, within BPHYT_RS24005at 952.467 kb on + strand, within BPHYT_RS24010at 952.467 kb on + strand, within BPHYT_RS24010at 952.791 kb on + strand, within BPHYT_RS24010at 953.951 kb on - strandat 954.237 kb on + strand, within BPHYT_RS24020at 954.265 kb on + strand, within BPHYT_RS24020at 954.516 kb on + strand, within BPHYT_RS24020

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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952,039 + BPHYT_RS24005 0.83 -1.3
952,467 + BPHYT_RS24010 0.38 -0.4
952,467 + BPHYT_RS24010 0.38 -0.0
952,791 + BPHYT_RS24010 0.81 +1.2
953,951 - +0.6
954,237 + BPHYT_RS24020 0.27 -0.4
954,265 + BPHYT_RS24020 0.28 -0.3
954,516 + BPHYT_RS24020 0.44 +0.2

Or see this region's nucleotide sequence