Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22645 and BPHYT_RS22650 are separated by 481 nucleotides BPHYT_RS22650 and BPHYT_RS22655 are separated by 394 nucleotides
BPHYT_RS22645: BPHYT_RS22645 - D-amino acid oxidase, at 636,841 to 637,968
_RS22645
BPHYT_RS22650: BPHYT_RS22650 - pyridine nucleotide-disulfide oxidoreductase, at 638,450 to 639,736
_RS22650
BPHYT_RS22655: BPHYT_RS22655 - AraC family transcriptional regulator, at 640,131 to 640,898
_RS22655
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 637.543 kb on + strand, within BPHYT_RS22645 at 637.705 kb on + strand, within BPHYT_RS22645 at 637.705 kb on + strand, within BPHYT_RS22645 at 637.706 kb on - strand, within BPHYT_RS22645 at 638.015 kb on - strand at 638.113 kb on - strand at 638.238 kb on + strand at 638.239 kb on - strand at 638.253 kb on + strand at 638.253 kb on + strand at 638.984 kb on + strand, within BPHYT_RS22650 at 639.075 kb on - strand, within BPHYT_RS22650 at 639.283 kb on + strand, within BPHYT_RS22650 at 639.283 kb on + strand, within BPHYT_RS22650 at 639.284 kb on - strand, within BPHYT_RS22650 at 639.485 kb on - strand, within BPHYT_RS22650 at 639.543 kb on + strand, within BPHYT_RS22650 at 639.543 kb on + strand, within BPHYT_RS22650 at 639.543 kb on + strand, within BPHYT_RS22650 at 639.543 kb on + strand, within BPHYT_RS22650 at 639.544 kb on - strand, within BPHYT_RS22650 at 639.544 kb on - strand, within BPHYT_RS22650 at 639.580 kb on + strand, within BPHYT_RS22650 at 639.639 kb on - strand at 639.802 kb on + strand at 639.902 kb on - strand at 639.902 kb on - strand at 640.374 kb on + strand, within BPHYT_RS22655 at 640.375 kb on - strand, within BPHYT_RS22655 at 640.443 kb on + strand, within BPHYT_RS22655 at 640.444 kb on - strand, within BPHYT_RS22655 at 640.527 kb on - strand, within BPHYT_RS22655 at 640.611 kb on + strand, within BPHYT_RS22655 at 640.656 kb on - strand, within BPHYT_RS22655 at 640.656 kb on - strand, within BPHYT_RS22655 at 640.680 kb on + strand, within BPHYT_RS22655 at 640.680 kb on + strand, within BPHYT_RS22655 at 640.681 kb on - strand, within BPHYT_RS22655
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 637,543 + BPHYT_RS22645 0.62 -0.1 637,705 + BPHYT_RS22645 0.77 +0.8 637,705 + BPHYT_RS22645 0.77 +0.0 637,706 - BPHYT_RS22645 0.77 -0.7 638,015 - -0.7 638,113 - -0.1 638,238 + -1.5 638,239 - -0.1 638,253 + +3.1 638,253 + +0.5 638,984 + BPHYT_RS22650 0.41 -0.5 639,075 - BPHYT_RS22650 0.49 +0.8 639,283 + BPHYT_RS22650 0.65 -0.1 639,283 + BPHYT_RS22650 0.65 -1.2 639,284 - BPHYT_RS22650 0.65 +2.7 639,485 - BPHYT_RS22650 0.80 +0.8 639,543 + BPHYT_RS22650 0.85 +2.1 639,543 + BPHYT_RS22650 0.85 -2.9 639,543 + BPHYT_RS22650 0.85 +0.4 639,543 + BPHYT_RS22650 0.85 +0.5 639,544 - BPHYT_RS22650 0.85 +1.5 639,544 - BPHYT_RS22650 0.85 -1.7 639,580 + BPHYT_RS22650 0.88 +0.0 639,639 - -0.3 639,802 + -0.3 639,902 - +0.3 639,902 - +0.0 640,374 + BPHYT_RS22655 0.32 -1.2 640,375 - BPHYT_RS22655 0.32 -0.3 640,443 + BPHYT_RS22655 0.41 +0.8 640,444 - BPHYT_RS22655 0.41 -0.0 640,527 - BPHYT_RS22655 0.52 -0.2 640,611 + BPHYT_RS22655 0.62 -1.0 640,656 - BPHYT_RS22655 0.68 +2.0 640,656 - BPHYT_RS22655 0.68 +0.2 640,680 + BPHYT_RS22655 0.71 -0.5 640,680 + BPHYT_RS22655 0.71 +0.6 640,681 - BPHYT_RS22655 0.72 +0.4
Or see this region's nucleotide sequence