Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22640 and BPHYT_RS22645 overlap by 4 nucleotides BPHYT_RS22645 and BPHYT_RS22650 are separated by 481 nucleotides
BPHYT_RS22640: BPHYT_RS22640 - hydroxyproline-2-epimerase, at 635,888 to 636,844
_RS22640
BPHYT_RS22645: BPHYT_RS22645 - D-amino acid oxidase, at 636,841 to 637,968
_RS22645
BPHYT_RS22650: BPHYT_RS22650 - pyridine nucleotide-disulfide oxidoreductase, at 638,450 to 639,736
_RS22650
Position (kb) 636
637
638 Strain fitness (log2 ratio) -1
0
1
2
3 at 635.911 kb on + strand at 635.912 kb on - strand at 636.593 kb on + strand, within BPHYT_RS22640 at 636.719 kb on + strand, within BPHYT_RS22640 at 636.773 kb on + strand at 636.773 kb on + strand at 637.027 kb on + strand, within BPHYT_RS22645 at 637.273 kb on + strand, within BPHYT_RS22645 at 637.273 kb on + strand, within BPHYT_RS22645 at 637.416 kb on - strand, within BPHYT_RS22645 at 637.416 kb on - strand, within BPHYT_RS22645 at 637.416 kb on - strand, within BPHYT_RS22645 at 637.543 kb on + strand, within BPHYT_RS22645 at 637.705 kb on + strand, within BPHYT_RS22645 at 637.705 kb on + strand, within BPHYT_RS22645 at 637.706 kb on - strand, within BPHYT_RS22645 at 638.015 kb on - strand at 638.113 kb on - strand at 638.238 kb on + strand at 638.239 kb on - strand at 638.253 kb on + strand at 638.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 635,911 + -0.5 635,912 - +0.5 636,593 + BPHYT_RS22640 0.74 -0.1 636,719 + BPHYT_RS22640 0.87 +0.9 636,773 + -0.7 636,773 + -0.2 637,027 + BPHYT_RS22645 0.16 -0.1 637,273 + BPHYT_RS22645 0.38 +1.5 637,273 + BPHYT_RS22645 0.38 -0.2 637,416 - BPHYT_RS22645 0.51 -0.2 637,416 - BPHYT_RS22645 0.51 -1.1 637,416 - BPHYT_RS22645 0.51 +1.7 637,543 + BPHYT_RS22645 0.62 -0.1 637,705 + BPHYT_RS22645 0.77 +0.8 637,705 + BPHYT_RS22645 0.77 +0.0 637,706 - BPHYT_RS22645 0.77 -0.7 638,015 - -0.7 638,113 - -0.1 638,238 + -1.5 638,239 - -0.1 638,253 + +3.1 638,253 + +0.5
Or see this region's nucleotide sequence