Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19720 and BPHYT_RS19725 are separated by 75 nucleotides BPHYT_RS19725 and BPHYT_RS19730 are separated by 49 nucleotides
BPHYT_RS19720: BPHYT_RS19720 - arabinose ABC transporter ATP-binding protein, at 4,437,081 to 4,438,628
_RS19720
BPHYT_RS19725: BPHYT_RS19725 - arabinose ABC transporter permease, at 4,438,704 to 4,439,708
_RS19725
BPHYT_RS19730: BPHYT_RS19730 - L-arabonate dehydratase (EC 4.2.1.25) <small>(from data)</small>, at 4,439,758 to 4,441,491
_RS19730
Position (kb) 4438
4439
4440 Strain fitness (log2 ratio) -1
0
1 at 4437.727 kb on - strand, within BPHYT_RS19720 at 4437.727 kb on - strand, within BPHYT_RS19720 at 4437.727 kb on - strand, within BPHYT_RS19720 at 4437.727 kb on - strand, within BPHYT_RS19720 at 4437.754 kb on - strand, within BPHYT_RS19720 at 4437.754 kb on - strand, within BPHYT_RS19720 at 4437.879 kb on + strand, within BPHYT_RS19720 at 4438.041 kb on + strand, within BPHYT_RS19720 at 4438.042 kb on - strand, within BPHYT_RS19720 at 4438.155 kb on - strand, within BPHYT_RS19720 at 4438.155 kb on - strand, within BPHYT_RS19720 at 4438.155 kb on - strand, within BPHYT_RS19720 at 4438.446 kb on + strand, within BPHYT_RS19720 at 4438.447 kb on - strand, within BPHYT_RS19720 at 4438.447 kb on - strand, within BPHYT_RS19720 at 4438.459 kb on - strand, within BPHYT_RS19720 at 4438.697 kb on - strand at 4438.697 kb on - strand at 4438.776 kb on - strand at 4439.025 kb on - strand, within BPHYT_RS19725 at 4439.163 kb on + strand, within BPHYT_RS19725 at 4439.245 kb on - strand, within BPHYT_RS19725 at 4439.343 kb on - strand, within BPHYT_RS19725 at 4439.401 kb on + strand, within BPHYT_RS19725 at 4439.402 kb on - strand, within BPHYT_RS19725 at 4439.451 kb on - strand, within BPHYT_RS19725 at 4439.617 kb on + strand at 4439.628 kb on + strand at 4439.629 kb on - strand at 4439.634 kb on + strand at 4439.639 kb on + strand at 4439.640 kb on - strand at 4439.718 kb on + strand at 4439.718 kb on + strand at 4439.718 kb on + strand at 4439.719 kb on - strand at 4439.719 kb on - strand at 4439.719 kb on - strand at 4439.779 kb on - strand at 4439.835 kb on - strand at 4439.963 kb on - strand, within BPHYT_RS19730 at 4440.706 kb on + strand, within BPHYT_RS19730 at 4440.707 kb on - strand, within BPHYT_RS19730
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 4,437,727 - BPHYT_RS19720 0.42 -0.2 4,437,727 - BPHYT_RS19720 0.42 +0.6 4,437,727 - BPHYT_RS19720 0.42 +1.2 4,437,727 - BPHYT_RS19720 0.42 +1.4 4,437,754 - BPHYT_RS19720 0.43 -0.3 4,437,754 - BPHYT_RS19720 0.43 +0.2 4,437,879 + BPHYT_RS19720 0.52 -0.3 4,438,041 + BPHYT_RS19720 0.62 +0.1 4,438,042 - BPHYT_RS19720 0.62 -0.4 4,438,155 - BPHYT_RS19720 0.69 -0.4 4,438,155 - BPHYT_RS19720 0.69 +0.4 4,438,155 - BPHYT_RS19720 0.69 +0.6 4,438,446 + BPHYT_RS19720 0.88 -0.4 4,438,447 - BPHYT_RS19720 0.88 -0.1 4,438,447 - BPHYT_RS19720 0.88 -0.3 4,438,459 - BPHYT_RS19720 0.89 +0.6 4,438,697 - -0.7 4,438,697 - -1.6 4,438,776 - +0.3 4,439,025 - BPHYT_RS19725 0.32 +1.0 4,439,163 + BPHYT_RS19725 0.46 -0.5 4,439,245 - BPHYT_RS19725 0.54 -0.5 4,439,343 - BPHYT_RS19725 0.64 +0.4 4,439,401 + BPHYT_RS19725 0.69 +0.5 4,439,402 - BPHYT_RS19725 0.69 -0.7 4,439,451 - BPHYT_RS19725 0.74 -0.7 4,439,617 + -0.8 4,439,628 + -0.5 4,439,629 - +1.0 4,439,634 + -0.1 4,439,639 + +0.2 4,439,640 - +0.2 4,439,718 + -0.5 4,439,718 + -0.1 4,439,718 + -0.2 4,439,719 - +0.4 4,439,719 - +0.2 4,439,719 - -0.2 4,439,779 - +0.0 4,439,835 - -0.2 4,439,963 - BPHYT_RS19730 0.12 +0.1 4,440,706 + BPHYT_RS19730 0.55 -1.2 4,440,707 - BPHYT_RS19730 0.55 +0.2
Or see this region's nucleotide sequence