Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13865

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS13860 and BPHYT_RS13865 are separated by 129 nucleotidesBPHYT_RS13865 and BPHYT_RS13870 are separated by 219 nucleotides BPHYT_RS13860: BPHYT_RS13860 - UTP--glucose-1-phosphate uridylyltransferase, at 3,165,289 to 3,166,170 _RS13860 BPHYT_RS13865: BPHYT_RS13865 - response regulator SirA, at 3,166,300 to 3,166,527 _RS13865 BPHYT_RS13870: BPHYT_RS13870 - transposase, at 3,166,747 to 3,167,583 _RS13870 Position (kb) 3166 3167Strain fitness (log2 ratio) -1 0 1at 3166.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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3,166,677 - -0.4

Or see this region's nucleotide sequence