Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07700

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07695 and BPHYT_RS07700 are separated by 41 nucleotidesBPHYT_RS07700 and BPHYT_RS07705 overlap by 4 nucleotides BPHYT_RS07695: BPHYT_RS07695 - acetylornithine aminotransferase, at 1,750,448 to 1,751,683 _RS07695 BPHYT_RS07700: BPHYT_RS07700 - arginine N-succinyltransferase, at 1,751,725 to 1,752,783 _RS07700 BPHYT_RS07705: BPHYT_RS07705 - arginine succinyltransferase, at 1,752,780 to 1,753,820 _RS07705 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1750.835 kb on + strand, within BPHYT_RS07695at 1752.166 kb on + strand, within BPHYT_RS07700at 1753.045 kb on - strand, within BPHYT_RS07705at 1753.330 kb on - strand, within BPHYT_RS07705at 1753.356 kb on + strand, within BPHYT_RS07705at 1753.416 kb on + strand, within BPHYT_RS07705

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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1,750,835 + BPHYT_RS07695 0.31 -2.4
1,752,166 + BPHYT_RS07700 0.42 -1.4
1,753,045 - BPHYT_RS07705 0.25 -0.6
1,753,330 - BPHYT_RS07705 0.53 +1.4
1,753,356 + BPHYT_RS07705 0.55 +3.0
1,753,416 + BPHYT_RS07705 0.61 -0.9

Or see this region's nucleotide sequence