Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02435 and BPHYT_RS02440 are separated by 198 nucleotides BPHYT_RS02440 and BPHYT_RS02445 are separated by 13 nucleotides BPHYT_RS02445 and BPHYT_RS02450 are separated by 311 nucleotides
BPHYT_RS02435: BPHYT_RS02435 - hypothetical protein, at 553,671 to 553,997
_RS02435
BPHYT_RS02440: BPHYT_RS02440 - octanoyltransferase, at 554,196 to 554,921
_RS02440
BPHYT_RS02445: BPHYT_RS02445 - lipoyl synthase, at 554,935 to 555,942
_RS02445
BPHYT_RS02450: BPHYT_RS02450 - hypothetical protein, at 556,254 to 556,700
_RS02450
Position (kb) 554
555
556 Strain fitness (log2 ratio) -1
0
1 at 553.971 kb on - strand at 553.971 kb on - strand at 553.971 kb on - strand at 555.949 kb on + strand at 555.956 kb on + strand at 555.957 kb on - strand at 556.070 kb on + strand at 556.073 kb on + strand at 556.677 kb on - strand at 556.677 kb on - strand at 556.701 kb on - strand at 556.901 kb on + strand at 556.931 kb on - strand at 556.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 553,971 - -0.1 553,971 - -0.7 553,971 - -1.2 555,949 + +0.6 555,956 + -0.2 555,957 - +0.1 556,070 + +0.8 556,073 + -0.3 556,677 - -1.2 556,677 - -0.1 556,701 - +0.1 556,901 + +0.1 556,931 - -0.0 556,931 - +0.6
Or see this region's nucleotide sequence