Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01355 and BPHYT_RS01360 are separated by 863 nucleotides
BPHYT_RS01355: BPHYT_RS01355 - hypothetical protein, at 309,631 to 309,993
_RS01355
BPHYT_RS01360: BPHYT_RS01360 - hypothetical protein, at 310,857 to 311,438
_RS01360
Position (kb) 310
311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 309.965 kb on + strand at 309.965 kb on + strand at 309.965 kb on + strand at 309.991 kb on + strand at 310.045 kb on + strand at 310.045 kb on + strand at 310.046 kb on - strand at 310.046 kb on - strand at 310.080 kb on + strand at 310.155 kb on + strand at 310.155 kb on + strand at 310.156 kb on - strand at 310.156 kb on - strand at 310.156 kb on - strand at 310.306 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.374 kb on - strand at 310.374 kb on - strand at 310.400 kb on - strand at 310.435 kb on - strand at 310.465 kb on - strand at 310.465 kb on - strand at 310.525 kb on + strand at 310.525 kb on + strand at 310.526 kb on - strand at 310.526 kb on - strand at 310.526 kb on - strand at 310.529 kb on + strand at 310.530 kb on - strand at 310.530 kb on - strand at 310.530 kb on - strand at 310.554 kb on - strand at 310.560 kb on + strand at 310.560 kb on + strand at 310.561 kb on - strand at 310.561 kb on - strand at 310.742 kb on + strand at 310.776 kb on + strand at 310.776 kb on + strand at 310.783 kb on - strand at 310.790 kb on + strand at 310.825 kb on + strand at 310.825 kb on + strand at 310.837 kb on + strand at 310.838 kb on - strand at 310.838 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 310.881 kb on - strand at 311.012 kb on + strand, within BPHYT_RS01360 at 311.012 kb on + strand, within BPHYT_RS01360 at 311.013 kb on - strand, within BPHYT_RS01360 at 311.053 kb on + strand, within BPHYT_RS01360 at 311.053 kb on + strand, within BPHYT_RS01360 at 311.053 kb on + strand, within BPHYT_RS01360 at 311.053 kb on + strand, within BPHYT_RS01360 at 311.053 kb on + strand, within BPHYT_RS01360 at 311.053 kb on + strand, within BPHYT_RS01360 at 311.053 kb on + strand, within BPHYT_RS01360 at 311.054 kb on - strand, within BPHYT_RS01360 at 311.054 kb on - strand, within BPHYT_RS01360 at 311.054 kb on - strand, within BPHYT_RS01360 at 311.054 kb on - strand, within BPHYT_RS01360 at 311.054 kb on - strand, within BPHYT_RS01360 at 311.054 kb on - strand, within BPHYT_RS01360 at 311.057 kb on + strand, within BPHYT_RS01360 at 311.057 kb on + strand, within BPHYT_RS01360 at 311.112 kb on + strand, within BPHYT_RS01360 at 311.112 kb on + strand, within BPHYT_RS01360 at 311.112 kb on + strand, within BPHYT_RS01360 at 311.113 kb on - strand, within BPHYT_RS01360 at 311.113 kb on - strand, within BPHYT_RS01360 at 311.113 kb on - strand, within BPHYT_RS01360 at 311.113 kb on - strand, within BPHYT_RS01360 at 311.191 kb on - strand, within BPHYT_RS01360 at 311.321 kb on + strand, within BPHYT_RS01360 at 311.322 kb on - strand, within BPHYT_RS01360 at 311.350 kb on + strand, within BPHYT_RS01360 at 311.368 kb on + strand, within BPHYT_RS01360 at 311.369 kb on - strand, within BPHYT_RS01360 at 311.483 kb on + strand at 311.484 kb on - strand at 311.484 kb on - strand at 311.484 kb on - strand at 311.528 kb on + strand at 311.528 kb on + strand at 311.529 kb on - strand at 311.547 kb on - strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.566 kb on + strand at 311.567 kb on - strand at 311.589 kb on + strand at 311.589 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.600 kb on + strand at 311.601 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.850 kb on - strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.947 kb on + strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.948 kb on - strand at 311.961 kb on + strand at 312.014 kb on + strand at 312.109 kb on - strand at 312.109 kb on - strand at 312.109 kb on - strand at 312.111 kb on + strand at 312.133 kb on + strand at 312.134 kb on - strand at 312.136 kb on + strand at 312.142 kb on + strand at 312.143 kb on - strand at 312.143 kb on - strand at 312.143 kb on - strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.148 kb on + strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.149 kb on - strand at 312.151 kb on - strand at 312.180 kb on + strand at 312.180 kb on + strand at 312.181 kb on - strand at 312.238 kb on + strand at 312.239 kb on - strand at 312.239 kb on - strand at 312.436 kb on + strand at 312.436 kb on + strand at 312.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 309,965 + -0.5 309,965 + -0.9 309,965 + +3.2 309,991 + +0.3 310,045 + -0.3 310,045 + +0.5 310,046 - +2.4 310,046 - +1.1 310,080 + -0.3 310,155 + +0.1 310,155 + +0.1 310,156 - -1.9 310,156 - -1.2 310,156 - +0.4 310,306 + +0.3 310,353 + -0.9 310,353 + -0.7 310,353 + -2.4 310,374 - +0.6 310,374 - -1.1 310,400 - -0.3 310,435 - +0.2 310,465 - -1.4 310,465 - -0.4 310,525 + +0.1 310,525 + -0.4 310,526 - -0.2 310,526 - +0.2 310,526 - -0.6 310,529 + -1.0 310,530 - -0.1 310,530 - +0.7 310,530 - -1.0 310,554 - +0.5 310,560 + -1.7 310,560 + -0.8 310,561 - -2.3 310,561 - -0.4 310,742 + -0.5 310,776 + +1.4 310,776 + -0.1 310,783 - -0.2 310,790 + +0.2 310,825 + +1.4 310,825 + +0.4 310,837 + -0.6 310,838 - -1.4 310,838 - +0.3 310,881 - +0.3 310,881 - +0.3 310,881 - +0.8 311,012 + BPHYT_RS01360 0.27 +1.8 311,012 + BPHYT_RS01360 0.27 +0.7 311,013 - BPHYT_RS01360 0.27 +0.6 311,053 + BPHYT_RS01360 0.34 +0.0 311,053 + BPHYT_RS01360 0.34 +0.6 311,053 + BPHYT_RS01360 0.34 -0.0 311,053 + BPHYT_RS01360 0.34 -1.7 311,053 + BPHYT_RS01360 0.34 -1.2 311,053 + BPHYT_RS01360 0.34 +0.6 311,053 + BPHYT_RS01360 0.34 -0.8 311,054 - BPHYT_RS01360 0.34 +0.4 311,054 - BPHYT_RS01360 0.34 +0.7 311,054 - BPHYT_RS01360 0.34 +0.5 311,054 - BPHYT_RS01360 0.34 +0.1 311,054 - BPHYT_RS01360 0.34 +0.8 311,054 - BPHYT_RS01360 0.34 -0.8 311,057 + BPHYT_RS01360 0.34 +0.2 311,057 + BPHYT_RS01360 0.34 -0.4 311,112 + BPHYT_RS01360 0.44 +0.2 311,112 + BPHYT_RS01360 0.44 -0.1 311,112 + BPHYT_RS01360 0.44 +0.4 311,113 - BPHYT_RS01360 0.44 -0.4 311,113 - BPHYT_RS01360 0.44 -0.2 311,113 - BPHYT_RS01360 0.44 +1.6 311,113 - BPHYT_RS01360 0.44 +0.3 311,191 - BPHYT_RS01360 0.57 +0.3 311,321 + BPHYT_RS01360 0.80 +0.7 311,322 - BPHYT_RS01360 0.80 +0.5 311,350 + BPHYT_RS01360 0.85 +0.3 311,368 + BPHYT_RS01360 0.88 -0.4 311,369 - BPHYT_RS01360 0.88 -0.3 311,483 + -0.0 311,484 - +1.0 311,484 - -0.4 311,484 - -0.4 311,528 + +0.4 311,528 + +0.8 311,529 - -1.8 311,547 - +0.1 311,566 + +1.1 311,566 + +0.3 311,566 + +0.6 311,566 + +0.0 311,566 + +0.8 311,567 - -0.3 311,589 + -1.0 311,589 + -0.3 311,600 + -0.1 311,600 + -0.0 311,600 + +0.5 311,600 + +0.1 311,601 - -0.0 311,850 - -0.1 311,850 - -0.4 311,850 - -0.3 311,850 - -0.0 311,947 + -1.4 311,947 + -0.1 311,947 + +0.3 311,947 + +0.9 311,947 + +0.3 311,947 + +0.4 311,948 - -0.4 311,948 - +2.5 311,948 - -1.1 311,948 - +0.5 311,961 + +0.6 312,014 + -1.4 312,109 - +0.2 312,109 - +0.5 312,109 - -0.1 312,111 + -1.0 312,133 + -0.1 312,134 - -0.0 312,136 + +0.2 312,142 + -0.4 312,143 - -1.0 312,143 - -0.6 312,143 - -3.2 312,148 + -0.5 312,148 + +0.5 312,148 + +0.9 312,148 + +0.5 312,148 + +0.3 312,148 + -0.3 312,148 + +0.1 312,148 + +0.2 312,148 + +1.6 312,148 + +0.4 312,149 - -0.7 312,149 - +0.4 312,149 - -0.1 312,149 - -0.1 312,149 - -0.9 312,149 - +0.2 312,149 - +0.0 312,149 - +0.1 312,151 - -0.2 312,180 + -0.7 312,180 + +0.6 312,181 - +0.8 312,238 + -0.3 312,239 - -1.0 312,239 - +0.4 312,436 + -0.2 312,436 + -1.7 312,437 - +0.3
Or see this region's nucleotide sequence