Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00250

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00240 and BPHYT_RS00245 overlap by 4 nucleotidesBPHYT_RS00245 and BPHYT_RS00250 are separated by 170 nucleotidesBPHYT_RS00250 and BPHYT_RS00255 are separated by 68 nucleotides BPHYT_RS00240: BPHYT_RS00240 - amino acid ABC substrate-binding protein, at 62,769 to 63,911 _RS00240 BPHYT_RS00245: BPHYT_RS00245 - response regulator receiver, at 63,908 to 64,510 _RS00245 BPHYT_RS00250: BPHYT_RS00250 - hydratase, at 64,681 to 65,532 _RS00250 BPHYT_RS00255: BPHYT_RS00255 - amino acid ABC transporter, at 65,601 to 66,764 _RS00255 Position (kb) 64 65 66Strain fitness (log2 ratio) -1 0 1 2at 63.764 kb on + strand, within BPHYT_RS00240at 63.764 kb on + strand, within BPHYT_RS00240at 63.855 kb on + strandat 63.944 kb on - strandat 63.957 kb on + strandat 63.957 kb on + strandat 63.957 kb on + strandat 64.192 kb on + strand, within BPHYT_RS00245at 64.584 kb on - strandat 64.587 kb on - strandat 64.757 kb on + strandat 64.758 kb on - strandat 64.942 kb on + strand, within BPHYT_RS00250at 64.985 kb on - strand, within BPHYT_RS00250at 65.017 kb on + strand, within BPHYT_RS00250at 65.099 kb on - strand, within BPHYT_RS00250at 65.170 kb on + strand, within BPHYT_RS00250at 65.170 kb on + strand, within BPHYT_RS00250at 65.170 kb on + strand, within BPHYT_RS00250at 65.171 kb on - strand, within BPHYT_RS00250at 65.196 kb on - strand, within BPHYT_RS00250at 65.217 kb on - strand, within BPHYT_RS00250at 65.393 kb on + strand, within BPHYT_RS00250at 65.394 kb on - strand, within BPHYT_RS00250at 65.497 kb on - strandat 65.500 kb on + strandat 65.501 kb on - strandat 65.597 kb on + strandat 65.597 kb on + strandat 65.597 kb on + strandat 65.598 kb on - strandat 65.598 kb on - strandat 65.612 kb on - strandat 65.862 kb on + strand, within BPHYT_RS00255at 65.863 kb on - strand, within BPHYT_RS00255at 65.969 kb on + strand, within BPHYT_RS00255at 65.970 kb on - strand, within BPHYT_RS00255at 66.009 kb on + strand, within BPHYT_RS00255at 66.009 kb on + strand, within BPHYT_RS00255at 66.009 kb on + strand, within BPHYT_RS00255at 66.010 kb on - strand, within BPHYT_RS00255at 66.010 kb on - strand, within BPHYT_RS00255at 66.010 kb on - strandat 66.010 kb on - strand, within BPHYT_RS00255at 66.010 kb on - strand, within BPHYT_RS00255at 66.015 kb on + strand, within BPHYT_RS00255at 66.015 kb on + strand, within BPHYT_RS00255at 66.015 kb on + strandat 66.015 kb on + strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.016 kb on - strand, within BPHYT_RS00255at 66.017 kb on + strand, within BPHYT_RS00255at 66.017 kb on + strand, within BPHYT_RS00255at 66.018 kb on - strand, within BPHYT_RS00255at 66.064 kb on - strand, within BPHYT_RS00255at 66.064 kb on - strand, within BPHYT_RS00255at 66.153 kb on + strand, within BPHYT_RS00255at 66.153 kb on + strand, within BPHYT_RS00255at 66.193 kb on - strand, within BPHYT_RS00255at 66.403 kb on - strand, within BPHYT_RS00255at 66.420 kb on + strand, within BPHYT_RS00255at 66.420 kb on + strand, within BPHYT_RS00255at 66.421 kb on - strand, within BPHYT_RS00255at 66.522 kb on + strand, within BPHYT_RS00255at 66.522 kb on + strand, within BPHYT_RS00255

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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63,764 + BPHYT_RS00240 0.87 -0.6
63,764 + BPHYT_RS00240 0.87 -1.5
63,855 + +0.6
63,944 - -0.4
63,957 + +0.4
63,957 + +1.9
63,957 + +1.6
64,192 + BPHYT_RS00245 0.47 -0.4
64,584 - -0.4
64,587 - +1.4
64,757 + -1.2
64,758 - +0.3
64,942 + BPHYT_RS00250 0.31 +0.1
64,985 - BPHYT_RS00250 0.36 -0.5
65,017 + BPHYT_RS00250 0.39 -1.0
65,099 - BPHYT_RS00250 0.49 +1.2
65,170 + BPHYT_RS00250 0.57 -0.4
65,170 + BPHYT_RS00250 0.57 -0.1
65,170 + BPHYT_RS00250 0.57 +0.0
65,171 - BPHYT_RS00250 0.58 -0.6
65,196 - BPHYT_RS00250 0.60 -0.8
65,217 - BPHYT_RS00250 0.63 -1.6
65,393 + BPHYT_RS00250 0.84 +0.4
65,394 - BPHYT_RS00250 0.84 +0.0
65,497 - +0.8
65,500 + -1.2
65,501 - -0.1
65,597 + +1.2
65,597 + -0.8
65,597 + +0.3
65,598 - +0.4
65,598 - -0.4
65,612 - -1.0
65,862 + BPHYT_RS00255 0.22 +0.8
65,863 - BPHYT_RS00255 0.23 -0.2
65,969 + BPHYT_RS00255 0.32 +0.3
65,970 - BPHYT_RS00255 0.32 -0.3
66,009 + BPHYT_RS00255 0.35 -1.3
66,009 + BPHYT_RS00255 0.35 -0.0
66,009 + BPHYT_RS00255 0.35 -1.1
66,010 - BPHYT_RS00255 0.35 +0.4
66,010 - BPHYT_RS00255 0.35 -0.7
66,010 - +0.0
66,010 - BPHYT_RS00255 0.35 -0.9
66,010 - BPHYT_RS00255 0.35 -0.3
66,015 + BPHYT_RS00255 0.36 -0.4
66,015 + BPHYT_RS00255 0.36 -1.0
66,015 + +0.6
66,015 + BPHYT_RS00255 0.36 +0.0
66,016 - BPHYT_RS00255 0.36 -0.3
66,016 - BPHYT_RS00255 0.36 -1.2
66,016 - BPHYT_RS00255 0.36 -1.2
66,016 - BPHYT_RS00255 0.36 +0.1
66,017 + BPHYT_RS00255 0.36 -1.0
66,017 + BPHYT_RS00255 0.36 -0.8
66,018 - BPHYT_RS00255 0.36 +0.3
66,064 - BPHYT_RS00255 0.40 +0.0
66,064 - BPHYT_RS00255 0.40 +0.1
66,153 + BPHYT_RS00255 0.47 -0.2
66,153 + BPHYT_RS00255 0.47 -0.1
66,193 - BPHYT_RS00255 0.51 +0.7
66,403 - BPHYT_RS00255 0.69 +1.2
66,420 + BPHYT_RS00255 0.70 -0.3
66,420 + BPHYT_RS00255 0.70 -0.3
66,421 - BPHYT_RS00255 0.70 -0.5
66,522 + BPHYT_RS00255 0.79 +0.6
66,522 + BPHYT_RS00255 0.79 -1.4

Or see this region's nucleotide sequence