Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36395 and BPHYT_RS36400 are separated by 683 nucleotides BPHYT_RS36400 and BPHYT_RS36405 overlap by 4 nucleotides
BPHYT_RS36395: BPHYT_RS36395 - hypothetical protein, at 91,609 to 91,920
_RS36395
BPHYT_RS36400: BPHYT_RS36400 - hypothetical protein, at 92,604 to 93,197
_RS36400
BPHYT_RS36405: BPHYT_RS36405 - hypothetical protein, at 93,194 to 94,993
_RS36405
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1 at 91.650 kb on + strand, within BPHYT_RS36395 at 91.651 kb on - strand, within BPHYT_RS36395 at 91.985 kb on - strand at 91.985 kb on - strand at 92.180 kb on + strand at 92.185 kb on - strand at 92.185 kb on - strand at 92.190 kb on + strand at 92.630 kb on - strand at 92.925 kb on - strand, within BPHYT_RS36400 at 93.307 kb on + strand at 93.330 kb on + strand at 93.347 kb on + strand at 93.393 kb on + strand, within BPHYT_RS36405 at 93.394 kb on - strand, within BPHYT_RS36405 at 93.400 kb on - strand, within BPHYT_RS36405 at 93.563 kb on + strand, within BPHYT_RS36405 at 93.563 kb on + strand, within BPHYT_RS36405 at 93.564 kb on - strand, within BPHYT_RS36405 at 93.564 kb on - strand, within BPHYT_RS36405 at 93.686 kb on + strand, within BPHYT_RS36405 at 93.687 kb on - strand, within BPHYT_RS36405 at 93.804 kb on - strand, within BPHYT_RS36405 at 93.846 kb on - strand, within BPHYT_RS36405 at 93.846 kb on - strand, within BPHYT_RS36405 at 93.968 kb on + strand, within BPHYT_RS36405 at 93.968 kb on + strand, within BPHYT_RS36405 at 93.969 kb on - strand, within BPHYT_RS36405 at 94.063 kb on - strand, within BPHYT_RS36405
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 91,650 + BPHYT_RS36395 0.13 -0.0 91,651 - BPHYT_RS36395 0.13 -1.3 91,985 - +0.6 91,985 - -0.8 92,180 + -1.1 92,185 - -1.8 92,185 - -1.3 92,190 + -1.2 92,630 - -0.8 92,925 - BPHYT_RS36400 0.54 +1.1 93,307 + +1.7 93,330 + -0.6 93,347 + -1.2 93,393 + BPHYT_RS36405 0.11 -2.0 93,394 - BPHYT_RS36405 0.11 -0.5 93,400 - BPHYT_RS36405 0.11 +1.3 93,563 + BPHYT_RS36405 0.20 -1.0 93,563 + BPHYT_RS36405 0.20 -0.3 93,564 - BPHYT_RS36405 0.21 -1.0 93,564 - BPHYT_RS36405 0.21 +0.8 93,686 + BPHYT_RS36405 0.27 +0.2 93,687 - BPHYT_RS36405 0.27 +1.3 93,804 - BPHYT_RS36405 0.34 +0.0 93,846 - BPHYT_RS36405 0.36 +0.4 93,846 - BPHYT_RS36405 0.36 +0.7 93,968 + BPHYT_RS36405 0.43 -0.3 93,968 + BPHYT_RS36405 0.43 -1.6 93,969 - BPHYT_RS36405 0.43 -0.5 94,063 - BPHYT_RS36405 0.48 -1.5
Or see this region's nucleotide sequence