Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36265 and BPHYT_RS36270 are separated by 3 nucleotides BPHYT_RS36270 and BPHYT_RS36275 are separated by 386 nucleotides BPHYT_RS36275 and BPHYT_RS36280 are separated by 1 nucleotides
BPHYT_RS36265: BPHYT_RS36265 - hypothetical protein, at 63,406 to 63,843
_RS36265
BPHYT_RS36270: BPHYT_RS36270 - hypothetical protein, at 63,847 to 64,425
_RS36270
BPHYT_RS36275: BPHYT_RS36275 - hypothetical protein, at 64,812 to 65,195
_RS36275
BPHYT_RS36280: BPHYT_RS36280 - type IV secretion system protein VirD4, at 65,197 to 66,885
_RS36280
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 64.588 kb on + strand at 64.823 kb on - strand at 64.931 kb on - strand, within BPHYT_RS36275 at 65.107 kb on - strand, within BPHYT_RS36275 at 65.107 kb on - strand, within BPHYT_RS36275 at 65.196 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.224 kb on + strand at 65.225 kb on - strand at 65.294 kb on + strand at 65.366 kb on + strand, within BPHYT_RS36280 at 65.367 kb on - strand, within BPHYT_RS36280 at 65.419 kb on - strand, within BPHYT_RS36280 at 65.458 kb on + strand at 65.532 kb on + strand, within BPHYT_RS36280 at 65.532 kb on + strand, within BPHYT_RS36280 at 65.532 kb on + strand, within BPHYT_RS36280 at 65.641 kb on - strand, within BPHYT_RS36280 at 65.802 kb on - strand, within BPHYT_RS36280 at 65.891 kb on + strand, within BPHYT_RS36280 at 65.972 kb on + strand at 66.006 kb on + strand, within BPHYT_RS36280 at 66.036 kb on + strand, within BPHYT_RS36280 at 66.061 kb on + strand, within BPHYT_RS36280 at 66.061 kb on + strand, within BPHYT_RS36280 at 66.062 kb on - strand, within BPHYT_RS36280 at 66.062 kb on - strand, within BPHYT_RS36280 at 66.062 kb on - strand, within BPHYT_RS36280 at 66.063 kb on + strand, within BPHYT_RS36280 at 66.079 kb on + strand, within BPHYT_RS36280 at 66.080 kb on - strand, within BPHYT_RS36280 at 66.110 kb on - strand, within BPHYT_RS36280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days remove 64,588 + +1.0 64,823 - +3.0 64,931 - BPHYT_RS36275 0.31 -1.0 65,107 - BPHYT_RS36275 0.77 -1.3 65,107 - BPHYT_RS36275 0.77 -0.4 65,196 + -0.0 65,224 + +0.8 65,224 + +3.4 65,224 + -2.3 65,224 + +1.1 65,224 + -1.7 65,225 - +1.4 65,294 + -0.0 65,366 + BPHYT_RS36280 0.10 +0.2 65,367 - BPHYT_RS36280 0.10 +0.9 65,419 - BPHYT_RS36280 0.13 +2.3 65,458 + -0.0 65,532 + BPHYT_RS36280 0.20 +1.3 65,532 + BPHYT_RS36280 0.20 -0.9 65,532 + BPHYT_RS36280 0.20 +1.5 65,641 - BPHYT_RS36280 0.26 +0.6 65,802 - BPHYT_RS36280 0.36 +0.1 65,891 + BPHYT_RS36280 0.41 -2.2 65,972 + +1.0 66,006 + BPHYT_RS36280 0.48 -0.2 66,036 + BPHYT_RS36280 0.50 -0.8 66,061 + BPHYT_RS36280 0.51 -1.9 66,061 + BPHYT_RS36280 0.51 -1.1 66,062 - BPHYT_RS36280 0.51 +0.6 66,062 - BPHYT_RS36280 0.51 -2.0 66,062 - BPHYT_RS36280 0.51 +1.0 66,063 + BPHYT_RS36280 0.51 -0.7 66,079 + BPHYT_RS36280 0.52 -0.3 66,080 - BPHYT_RS36280 0.52 -1.0 66,110 - BPHYT_RS36280 0.54 +0.3
Or see this region's nucleotide sequence