Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31450

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31445 and BPHYT_RS31450 are separated by 127 nucleotidesBPHYT_RS31450 and BPHYT_RS31455 are separated by 355 nucleotides BPHYT_RS31445: BPHYT_RS31445 - rod shape-determining protein MreB, at 2,609,217 to 2,610,248 _RS31445 BPHYT_RS31450: BPHYT_RS31450 - hypothetical protein, at 2,610,376 to 2,611,011 _RS31450 BPHYT_RS31455: BPHYT_RS31455 - electron transporter RnfB, at 2,611,367 to 2,611,954 _RS31455 Position (kb) 2610 2611 2612Strain fitness (log2 ratio) -1 0 1 2at 2609.907 kb on + strand, within BPHYT_RS31445at 2610.634 kb on + strand, within BPHYT_RS31450at 2610.635 kb on - strand, within BPHYT_RS31450at 2610.637 kb on + strand, within BPHYT_RS31450at 2610.665 kb on - strand, within BPHYT_RS31450

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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2,609,907 + BPHYT_RS31445 0.67 +0.8
2,610,634 + BPHYT_RS31450 0.41 +1.0
2,610,635 - BPHYT_RS31450 0.41 +0.6
2,610,637 + BPHYT_RS31450 0.41 +0.4
2,610,665 - BPHYT_RS31450 0.45 +2.0

Or see this region's nucleotide sequence