Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27655

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27645 and BPHYT_RS27650 are separated by 58 nucleotidesBPHYT_RS27650 and BPHYT_RS27655 are separated by 436 nucleotidesBPHYT_RS27655 and BPHYT_RS27660 are separated by 110 nucleotidesBPHYT_RS27660 and BPHYT_RS27665 are separated by 22 nucleotides BPHYT_RS27645: BPHYT_RS27645 - universal stress protein UspA, at 1,770,518 to 1,770,976 _RS27645 BPHYT_RS27650: BPHYT_RS27650 - hypothetical protein, at 1,771,035 to 1,771,382 _RS27650 BPHYT_RS27655: BPHYT_RS27655 - potassium transporter, at 1,771,819 to 1,772,652 _RS27655 BPHYT_RS27660: BPHYT_RS27660 - hypothetical protein, at 1,772,763 to 1,773,203 _RS27660 BPHYT_RS27665: BPHYT_RS27665 - flavodoxin, at 1,773,226 to 1,773,738 _RS27665 Position (kb) 1771 1772 1773Strain fitness (log2 ratio) -2 -1 0 1at 1770.981 kb on - strandat 1771.459 kb on + strandat 1772.330 kb on - strand, within BPHYT_RS27655at 1772.468 kb on + strand, within BPHYT_RS27655at 1772.833 kb on + strand, within BPHYT_RS27660at 1772.833 kb on + strand, within BPHYT_RS27660at 1772.864 kb on - strand, within BPHYT_RS27660at 1773.461 kb on + strand, within BPHYT_RS27665at 1773.524 kb on + strand, within BPHYT_RS27665

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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1,770,981 - +0.3
1,771,459 + +0.0
1,772,330 - BPHYT_RS27655 0.61 -2.4
1,772,468 + BPHYT_RS27655 0.78 -0.6
1,772,833 + BPHYT_RS27660 0.16 +0.3
1,772,833 + BPHYT_RS27660 0.16 -0.8
1,772,864 - BPHYT_RS27660 0.23 -0.1
1,773,461 + BPHYT_RS27665 0.46 +1.0
1,773,524 + BPHYT_RS27665 0.58 +0.3

Or see this region's nucleotide sequence