Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26655

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26650 and BPHYT_RS26655 are separated by 135 nucleotidesBPHYT_RS26655 and BPHYT_RS26660 are separated by 105 nucleotidesBPHYT_RS26660 and BPHYT_RS26665 are separated by 62 nucleotides BPHYT_RS26650: BPHYT_RS26650 - LysR family transcriptional regulator, at 1,546,667 to 1,547,599 _RS26650 BPHYT_RS26655: BPHYT_RS26655 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, at 1,547,735 to 1,550,029 _RS26655 BPHYT_RS26660: BPHYT_RS26660 - precorrin-4 C11-methyltransferase, at 1,550,135 to 1,550,860 _RS26660 BPHYT_RS26665: BPHYT_RS26665 - cobalt-precorrin-6X reductase, at 1,550,923 to 1,551,645 _RS26665 Position (kb) 1547 1548 1549 1550 1551Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1546.759 kb on - strandat 1547.469 kb on + strand, within BPHYT_RS26650at 1547.930 kb on + strandat 1547.930 kb on + strandat 1548.020 kb on + strand, within BPHYT_RS26655at 1548.092 kb on + strand, within BPHYT_RS26655at 1548.218 kb on + strand, within BPHYT_RS26655at 1548.219 kb on - strand, within BPHYT_RS26655at 1548.219 kb on - strand, within BPHYT_RS26655at 1548.405 kb on - strand, within BPHYT_RS26655at 1548.450 kb on - strand, within BPHYT_RS26655at 1548.608 kb on - strand, within BPHYT_RS26655at 1549.170 kb on + strand, within BPHYT_RS26655at 1549.651 kb on + strand, within BPHYT_RS26655at 1549.657 kb on + strand, within BPHYT_RS26655at 1549.788 kb on - strand, within BPHYT_RS26655at 1550.325 kb on + strand, within BPHYT_RS26660at 1550.336 kb on + strand, within BPHYT_RS26660at 1550.480 kb on - strand, within BPHYT_RS26660at 1550.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days
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1,546,759 - +0.0
1,547,469 + BPHYT_RS26650 0.86 -0.7
1,547,930 + -0.7
1,547,930 + +1.5
1,548,020 + BPHYT_RS26655 0.12 +3.8
1,548,092 + BPHYT_RS26655 0.16 +0.3
1,548,218 + BPHYT_RS26655 0.21 +0.7
1,548,219 - BPHYT_RS26655 0.21 +0.9
1,548,219 - BPHYT_RS26655 0.21 -1.2
1,548,405 - BPHYT_RS26655 0.29 -1.9
1,548,450 - BPHYT_RS26655 0.31 +0.0
1,548,608 - BPHYT_RS26655 0.38 -0.2
1,549,170 + BPHYT_RS26655 0.63 +1.8
1,549,651 + BPHYT_RS26655 0.83 -0.3
1,549,657 + BPHYT_RS26655 0.84 -1.2
1,549,788 - BPHYT_RS26655 0.89 +4.7
1,550,325 + BPHYT_RS26660 0.26 -0.7
1,550,336 + BPHYT_RS26660 0.28 -0.4
1,550,480 - BPHYT_RS26660 0.48 -0.0
1,550,846 - -0.3

Or see this region's nucleotide sequence